fxr1 (fxr1)


Basic Information

Item Value
gene id fxr1
gene name fxr1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11862989 ~ 11889149 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU213015
acacacatacacacacacacacacacagacttcCAGATTCTTCTCTCTGCTGCACTTTTCTGTTCCTTCACCGTGGATCAGGTACGAAGGGAGAACACGAAATAAACAAATGGAGCCTTGAAGTGCAATgcattattagcattttttttctgtccacttATCTTTACCATGAAGGCTAAACGCATATCTCTATAATGTGATCTATAAATGTTCTCACTCCAGACCTGCCAAGCATAGGAGCTTCATGCTGAACAGCAGAGTATGCTTCTACAAGTGAGCACTCTAGAAAACGCCAGTCGTCTTTTTCCCCCTCCGTAAAAACCGCAGATGAGCCGATCGATATATTAATCTGCAATAACTGACAGCTGCGTAGGTGTTTTGATCTTTCTGACATCAAATAAAGCTCTGGAAACCCTGCCCCCTACCGCCATCTCGCATTAGTAATCTCTCGTCTCGACTCGATTTTCCCACTGATGCGTCGTCacggtaaatggagaatgttttgagtttgttaatgtgaattaaaatctttcagtgtgtgttccacTTAGCTAACAGCTGTTAACTAGATTTATTTGGAATACCACAGAACATTTCCTGTCGATAGTCAAAAACAGTACTTTTTCGccgaaagagggaaaaaaaaaagattaaacagtCCTAATAGTGTTAAATCGAACACATTCTCCTGCGCTGTCAGAATTAATGCGTTCAAACAGCGCAATCGAGCCCATCACCACAGAAactagagtgtgtgtatatacagggttttacggtaataaccagtttttttttttttccctttgggTGGGGCACTTGTCTGTTTTAGTTAtgatgtagacactagaaagATTTACatagacactttttttttttattaattgctGTACATAACATCTTTTTTCCTAGAATATGAAGAAATTGttcatgtaaacttttctagtgttTAAATCATGAATAAAACAGGAGAGCATTTTCCCCACCCTCTTCCCCCCAAGGTGCTGGTGACTACCATAAaacctgtatatacacacactccagtttctaGCCTAGCCTAACAATATGTGAAGGGGTGATATCGATAATGTACTGTggttttactgcattttttcctcttcaggTCTGGCAGGTACTCGATTTCAGGCCAGTTCTCAGTAATCTCAGTGTTCCTGATTATCGGGCAGGTGTTTCAAAAGTATTCACGTCTTTTTACGTCCTTTTTTTGACCGACAAACCTCAGaagtgttgctgttgttattttgaGATGATGATAATGGGACAGAAGAAAGTATAATGCATGACCTTTCTGGGCTTCGTTACAgacaaatgaaatttttttaaaaagtctgtaATGTTTTAAGTACTCGATCAGATGTTGTGCCTTCAGAGAGTAGTGTCACTGGCTGGCTATAGGCCAAAATAAAACCCGAGAGGAGAATtagctgctttttatttttaatatgcaaCCACTTCGTGTtaggcatgtgccgataatTGGTCGGACGATATAACATCCAGTATTGAGATTAAGAATTTAGAAATAGGTTGGCTACGTAGGGTGGACTGTCTAATTTAGAACACAAGCACAGATCTCATCTAAGATCCCGTAATTTTGGACAAATCTGAAGGAATGTCTCAATTTTGTTCAATAGACGGGACAAAACTGATGCTAATGTTTCAGTAATATTgtgaacataaataaaaaattaggcAGTTCTCGTGAAAGTGTCATATCGGCACATGCCTGTTTCATTCAGTGATTTAGGGAATGCAGTCAGAAAAATAAAGGatgtttttgcactgaattGTAATTTCTGTCCCTTTAGAAAAATGTTAGTCTGGAAAACTGGTCTGTTACTGTCATTGATAGGAAAACACTCCATGTGACTCTTGGAAAGATTGACTGACTTCAGTGAAAGGAGCCTCactttggtttatttattaaaatgtacagtatttaaacGAGAAATGCAGAAGCAGTTCTTCTTCTAACACTAACTTGGCCACCTGAACGTAGCACGCAGGAGATGAATTGGACTACTGAAAGATCAACTTCCAGATTTTCCGTTCTGTAAACTGTTTCag
>XM_026930533.2
ATTTAGGATTGAGCCCGATAGCATCGCTTTAGCCTGAATAGTTCTAGAACTTTTACCCACAATTCCTAGCGTGTTCAAAATGGACGAACTGACGGTTGAGGTTCGCGGCTCCAATGGAGCTTATTACAagGGCTTCGTTAAAGATGTTCATGAGGACTCGCTCTCTATCTCATTCGAAAACAActgGCAGCCGGAGAGACAGGTCCCGTTCAGTGAAGTGCGCTTGCCTCCTCCTGCTGATGTGAAGAAGGAGATCTGCGAGGGAGATGAGGTGGAGATCTACTCGAGGGCGAACGAGCAGGAACCGTGTGGCTGGTGGCTTGCAAAAGTGCGCATGATGAAGGGAGATtTCTACGTGATTGAGTACGCAGCCTGTGACGCCACGTACAACGAGATCGTCACGTTCGAGCGCCTCCGACCCCTGAACCTCAACAAAGCTGTGACGAGAAACACCTTTTACAAGTGCACTGTTCCTGTTCCTGATGATCTAAAGGCTGCTTGTGAGAACGAGCTCGCTCATAAGGACTTTAAGAAGGCTGTAGGAGCAAGCAGGATCGTCTACAACCCTCAAACCTGTGAGCTGCTCATCCTGTCTGTAAACGAGGTGACAGTGAAGAGAGTGTCTCTTCTGAGCGACATGCACTTGAGGAGCATCCGCACTAAACTCAAGCTCATGTACTGGAACGAGGAGGCAACAAAGCACTTAGAGAGCACGAAGCAGCTAGCGTCAGCATTCCAGGAGGAGTTCACGGTGCGAGAGGATCTGATGGGTCTCGCCATCGGCAGCCACGGCACAAACATCCAGCAGGCCAGGAAAATTCCAGGAGTGACGGCCATCGAGCTGGACGAAGAGAGCGGCACATTCAGGATTTACGGAGAGACCGCTGAAGCCGTCCAGAAAGCAAGGAGCTACCTGGAGTTCCTGGAAGAGTCGGTACAAATTCCCAGAAATCTAGTTGGCAAGGTGATCGGTAAAAATGGCAAAGTCATTCAGGAGATCGTGGATAAATCCGGGGTGGTGCGCGTACGGATCGAAGGAGACAATGACAACAACCTTCCCAGGCAAGAGGGGATGGTGCCCTTCACGTTTGTTGGGACAAAGGAGAGCATTGGAAACATTCAGGTTCTTCTGGAGTACCACATCGCGTACCTGAACgAGGTGGAGCAGTTGAGGTTGGAGCGGCTGCAGATCGACGAGCAGCTGCGTCAGATCCGCCCTGTTCCAGCACATTCCactgagaaagacaaagagaagagCTACAAGATGGACGAAAGCGTATCCGCTGTCTCGCTGCACTCTGGGCGCTCCTACACGGGCCGGGGACGTGCACGCAGGACCGCCAACCACAACTCAGCCTACGGAACAAACTCAGAGCACTCATACAACTCAGAGACGGATTCTGAGAGGCGAGACGAGCTGAGTGACTTCTCTCTAAGAGAAGACGAGGACGAGCGCGGCATCCAGCCCAGGGACAGCAGAAGGAGAGCTGGAGGGGTCAGAGGTCGTGGTGGGATGGGAGTCAGAGGTCGCGGGGCTGGAAGAGGGTCAGGGAGCACCATGAGCTCAGTTCTGAAGGATCCAGCGAACCGTTACAGTATTTTGGATACCTCTGAGTCGGATCAGACTGCTGATGCAGAAGCGAGCGAGTGTGAACCGAGTTCTCGGAGCCGACGCTCGCGCCGCCGACGCCCTGAATCCGAAGACAACACATCACTCAGTGAGAATGGCCTCGATGAGCATGAATTTAAACCTCCGCGGCAAAATCGCAGCCGTCGCCGACGCATTCGGCCTCCAGAGGAGAGACAGCCAGTCACCGTGGCCGATTACATATCACGTGCTGAATCCCACAGCAGGCAGAGAATGCCACAAGAgctgaagaagaataaaaaagactTGGGTCAGGTGGACGTCATATCTGAGCACGGCGTCTCCCAACAGCTCACTAACGGCCCTGACGCTAACACTGATGAGCAGAAAAAGGCACCAGGCGCTTCCACAGAAACGGCCCCCAGCGGGAAAACCGATGTGGTCAAGCCAACCGTCGTTAACGGACTCTCCTAAACGCCCTGATCTGTTCCTGTATTCTTTCTCCAAACAGTCGTAacctttacatttttacaatagTGCTTGTACGAGCTCGCCaaagatagacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacgacttcCAGATTCTTCTCTCTGCTGCACTTTTCTGTTCCTTCACCGTGGATCAGGTACGAAGGGAGAACACGAAATAAACAAATGGAGCCTTGAAGTGCAA

Function

symbol description
fxr1 Predicted to enable mRNA 3'-UTR binding activity; protein homodimerization activity; and translation regulator activity. Acts upstream of or within several processes, including muscle cell development; skeletal muscle tissue development; and somitogenesis. Predicted to be located in cytoplasm. Predicted to be part of polysome. Predicted to be active in several cellular components, including dendrite; growth cone; and postsynaptic density. Is expressed in several structures, including adaxial cell; heart; musculature system; neurons; and skeletal muscle myoblast. Orthologous to human FXR1 (FMR1 autosomal homolog 1).

NR:

description
fragile X mental retardation syndrome-related protein 1 isoform X2

GO: NA

KEGG:

id description
K15516 FMR; fragile X mental retardation protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU213015 False 2085 lncRNA 0.39 2 11862989 11889149
XM_026930533.2 True 2320 mRNA 0.53 18 11864946 11878723

Neighbor

gene id symbol gene type direction distance location
sox2 sox2 coding downstream 117154 11742948 ~ 11745835 (-)
LOC117598431 NA coding downstream 341369 11520119 ~ 11521620 (-)
LOC113536618 LOC108271381 coding downstream 381480 11478608 ~ 11481509 (-)
psmd1 psmd1 coding downstream 387021 11428605 ~ 11475968 (-)
LOC113536755 acap2 coding downstream 625180 11196039 ~ 11237809 (-)
mccc1 mccc1,LOC106613934 coding upstream 69129 11958278 ~ 11973216 (-)
LOC113536502 NA coding upstream 84532 11973681 ~ 11980660 (-)
s1pr4 LOC108270882 coding upstream 173846 12062995 ~ 12065799 (-)
enc3 enc3,LOC108270871,LOC108430247,LOC107593050,LOC107731329,LOC107755983,LOC107695631,LOC105900972 coding upstream 422457 12311606 ~ 12324367 (-)
tmprss9 tmprss9 coding upstream 445053 12334202 ~ 12353009 (-)
G179972 NA non-coding downstream 85244 11728277 ~ 11777745 (-)
G179827 ttc14 non-coding downstream 300646 11558919 ~ 11562343 (-)
G179727 NA non-coding downstream 667316 11194437 ~ 11195673 (-)
G179487 NA non-coding downstream 1283529 10578420 ~ 10579460 (-)
G179485 NA non-coding downstream 1286957 10574536 ~ 10576032 (-)
G180111 NA non-coding upstream 107021 11996170 ~ 11996383 (-)
G180127 NA non-coding upstream 164132 12053281 ~ 12054861 (-)
G180278 NA non-coding upstream 184120 12073269 ~ 12074531 (-)
G180277 NA non-coding upstream 186089 12075238 ~ 12084317 (-)
G180273 NA non-coding upstream 285713 12174862 ~ 12300865 (-)
LOC117598402 NA other downstream 330956 11527957 ~ 11532033 (-)
LOC113536577 NA other downstream 344595 11510846 ~ 11518394 (-)
LOC117598430 NA other downstream 359027 11491707 ~ 11503962 (-)
G179803 ncl other downstream 442943 11409092 ~ 11420046 (-)
nppc anfc4 other downstream 616679 11243847 ~ 11246310 (-)
ncln ncln other upstream 131263 12020412 ~ 12032006 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other upstream 828212 12717361 ~ 12720476 (-)
rc3h1a rc3h1,LOC108429496 other upstream 862929 12752078 ~ 12782535 (-)
rpp21 LOC108271386 other upstream 1350574 13239723 ~ 13243200 (-)
ptprsa ptprs,ptprd,LOC107559826,LOC107679075 other upstream 1657765 13546914 ~ 13783127 (-)

Expression


Co-expression Network