Gene
RNA
| Item | Value |
|---|---|
| gene id | G180111 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 11996170 ~ 11996383 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU213091 | True | 214 | lncRNA | 0.39 | 1 | 11996170 | 11996383 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113536502 | NA | coding | downstream | 15510 | 11973681 ~ 11980660 (-) |
| mccc1 | mccc1,LOC106613934 | coding | downstream | 22954 | 11958278 ~ 11973216 (-) |
| sox2 | sox2 | coding | downstream | 250335 | 11742948 ~ 11745835 (-) |
| LOC117598431 | NA | coding | downstream | 474550 | 11520119 ~ 11521620 (-) |
| LOC113536618 | LOC108271381 | coding | downstream | 514661 | 11478608 ~ 11481509 (-) |
| s1pr4 | LOC108270882 | coding | upstream | 66612 | 12062995 ~ 12065799 (-) |
| enc3 | enc3,LOC108270871,LOC108430247,LOC107593050,LOC107731329,LOC107755983,LOC107695631,LOC105900972 | coding | upstream | 315223 | 12311606 ~ 12324367 (-) |
| tmprss9 | tmprss9 | coding | upstream | 337819 | 12334202 ~ 12353009 (-) |
| lsm7 | lsm7,LOC107593053 | coding | upstream | 356762 | 12353145 ~ 12355924 (-) |
| mfsd14a1 | mfsd14a,LOC106613595,LOC107704433 | coding | upstream | 376852 | 12373235 ~ 12387875 (-) |
| G179972 | NA | non-coding | downstream | 218425 | 11728277 ~ 11777745 (-) |
| G179827 | ttc14 | non-coding | downstream | 433827 | 11558919 ~ 11562343 (-) |
| G179727 | NA | non-coding | downstream | 800497 | 11194437 ~ 11195673 (-) |
| G179487 | NA | non-coding | downstream | 1416710 | 10578420 ~ 10579460 (-) |
| G179485 | NA | non-coding | downstream | 1420138 | 10574536 ~ 10576032 (-) |
| G180127 | NA | non-coding | upstream | 56898 | 12053281 ~ 12054861 (-) |
| G180278 | NA | non-coding | upstream | 76886 | 12073269 ~ 12074531 (-) |
| G180277 | NA | non-coding | upstream | 78855 | 12075238 ~ 12084317 (-) |
| G180273 | NA | non-coding | upstream | 178479 | 12174862 ~ 12300865 (-) |
| LOC117598410 | NA | non-coding | upstream | 242736 | 12239119 ~ 12249113 (-) |
| fxr1 | fxr1 | other | downstream | 107021 | 11862989 ~ 11889149 (-) |
| LOC117598402 | NA | other | downstream | 464137 | 11527957 ~ 11532033 (-) |
| LOC113536577 | NA | other | downstream | 477776 | 11510846 ~ 11518394 (-) |
| LOC117598430 | NA | other | downstream | 492208 | 11491707 ~ 11503962 (-) |
| G179803 | ncl | other | downstream | 576124 | 11409092 ~ 11420046 (-) |
| ncln | ncln | other | upstream | 24029 | 12020412 ~ 12032006 (-) |
| G180485 | s1pr1,LOC107715096,LOC107592715 | other | upstream | 720978 | 12717361 ~ 12720476 (-) |
| rc3h1a | rc3h1,LOC108429496 | other | upstream | 755695 | 12752078 ~ 12782535 (-) |
| rpp21 | LOC108271386 | other | upstream | 1243340 | 13239723 ~ 13243200 (-) |
| ptprsa | ptprs,ptprd,LOC107559826,LOC107679075 | other | upstream | 1550531 | 13546914 ~ 13783127 (-) |
