Gene
RNA
| Item | Value |
|---|---|
| gene id | G180192 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 12392887 ~ 12393491 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU213194 | True | 540 | lncRNA | 0.33 | 2 | 12392887 | 12393491 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| trnag-ucc_15 | NA | coding | upstream | 4646 | 12388170 ~ 12388241 (+) |
| sass6 | sass6,LOC107756018 | coding | upstream | 23110 | 12355995 ~ 12369777 (+) |
| arhgef18b | arhgef18 | coding | upstream | 91977 | 12239232 ~ 12300910 (+) |
| insrb | insr,LOC108271075 | coding | upstream | 159068 | 12154268 ~ 12233819 (+) |
| use1 | use1,LOC107756022 | coding | upstream | 245028 | 12139593 ~ 12147859 (+) |
| trmt13 | trmt13 | coding | downstream | 80442 | 12473933 ~ 12479769 (+) |
| LOC113536408 | LOC108271398 | coding | downstream | 90632 | 12484123 ~ 12487609 (+) |
| rtca | rtca,LOC107653637,LOC107715104,LOC107669846 | coding | downstream | 104360 | 12497851 ~ 12507903 (+) |
| LOC117598419 | gpr88 | coding | downstream | 171727 | 12565218 ~ 12566601 (+) |
| LOC113536666 | gpr88 | coding | downstream | 193982 | 12587473 ~ 12590364 (+) |
| G180144 | NA | non-coding | upstream | 205917 | 12181015 ~ 12186970 (+) |
| G180132 | NA | non-coding | upstream | 329977 | 12062559 ~ 12062910 (+) |
| G180122 | NA | non-coding | upstream | 339275 | 12053272 ~ 12053612 (+) |
| LOC113536506 | NA | non-coding | upstream | 339737 | 12045804 ~ 12053150 (+) |
| LOC117598401 | NA | non-coding | upstream | 355431 | 12032000 ~ 12037456 (+) |
| G180205 | NA | non-coding | downstream | 29211 | 12422702 ~ 12423152 (+) |
| G180242 | NA | non-coding | downstream | 93015 | 12486506 ~ 12486744 (+) |
| G180246 | NA | non-coding | downstream | 103240 | 12496731 ~ 12497651 (+) |
| G180267 | NA | non-coding | downstream | 260305 | 12653796 ~ 12654215 (+) |
| G180268 | NA | non-coding | downstream | 260931 | 12654422 ~ 12682563 (+) |
| timm13 | timm13,LOC107731338,LOC106573564,LOC107593051 | other | upstream | 59206 | 12328052 ~ 12333681 (+) |
| G180121 | NA | other | upstream | 337138 | 12054958 ~ 12055749 (+) |
| G179758 | psmd1 | other | upstream | 961990 | 11428613 ~ 11430897 (+) |
| G179643 | NA | other | upstream | 1231290 | 11160346 ~ 11161597 (+) |
| G179632 | NA | other | upstream | 1294076 | 11096153 ~ 11098811 (+) |
| cdc14ab | cdc14a | other | downstream | 119397 | 12512888 ~ 12561781 (+) |
| LOC117598398 | NA | other | downstream | 179666 | 12573157 ~ 12602064 (+) |
| ankmy1 | ankmy1 | other | downstream | 702882 | 13096373 ~ 13111706 (+) |
| aqp12 | LOC108271384,LOC108424976 | other | downstream | 842986 | 13236477 ~ 13239637 (+) |
| trnag-gcc_9 | NA | other | downstream | 856879 | 13250370 ~ 13250441 (+) |
