Gene
RNA
| Item | Value |
|---|---|
| gene id | G180246 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 12496731 ~ 12497651 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU213262 | True | 921 | lncRNA | 0.40 | 1 | 12496731 | 12497651 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113536408 | LOC108271398 | coding | upstream | 9122 | 12484123 ~ 12487609 (+) |
| trmt13 | trmt13 | coding | upstream | 16962 | 12473933 ~ 12479769 (+) |
| trnag-ucc_15 | NA | coding | upstream | 108490 | 12388170 ~ 12388241 (+) |
| sass6 | sass6,LOC107756018 | coding | upstream | 126954 | 12355995 ~ 12369777 (+) |
| arhgef18b | arhgef18 | coding | upstream | 195821 | 12239232 ~ 12300910 (+) |
| rtca | rtca,LOC107653637,LOC107715104,LOC107669846 | coding | downstream | 200 | 12497851 ~ 12507903 (+) |
| LOC117598419 | gpr88 | coding | downstream | 67567 | 12565218 ~ 12566601 (+) |
| LOC113536666 | gpr88 | coding | downstream | 89822 | 12587473 ~ 12590364 (+) |
| LOC117598432 | NA | coding | downstream | 104680 | 12602331 ~ 12605805 (+) |
| vcam1b | vcam1 | coding | downstream | 117423 | 12615074 ~ 12623948 (+) |
| G180242 | NA | non-coding | upstream | 9987 | 12486506 ~ 12486744 (+) |
| G180205 | NA | non-coding | upstream | 73579 | 12422702 ~ 12423152 (+) |
| G180192 | NA | non-coding | upstream | 103240 | 12392887 ~ 12393491 (+) |
| G180144 | NA | non-coding | upstream | 309761 | 12181015 ~ 12186970 (+) |
| G180132 | NA | non-coding | upstream | 433821 | 12062559 ~ 12062910 (+) |
| G180267 | NA | non-coding | downstream | 156145 | 12653796 ~ 12654215 (+) |
| G180268 | NA | non-coding | downstream | 156771 | 12654422 ~ 12682563 (+) |
| G180516 | NA | non-coding | downstream | 339217 | 12836868 ~ 12841282 (+) |
| G180534 | NA | non-coding | downstream | 353309 | 12850960 ~ 12851179 (+) |
| G180695 | NA | non-coding | downstream | 638486 | 13136137 ~ 13203148 (+) |
| timm13 | timm13,LOC107731338,LOC106573564,LOC107593051 | other | upstream | 163050 | 12328052 ~ 12333681 (+) |
| G180121 | NA | other | upstream | 440982 | 12054958 ~ 12055749 (+) |
| G179758 | psmd1 | other | upstream | 1065834 | 11428613 ~ 11430897 (+) |
| G179643 | NA | other | upstream | 1335134 | 11160346 ~ 11161597 (+) |
| G179632 | NA | other | upstream | 1397920 | 11096153 ~ 11098811 (+) |
| cdc14ab | cdc14a | other | downstream | 15237 | 12512888 ~ 12561781 (+) |
| LOC117598398 | NA | other | downstream | 75506 | 12573157 ~ 12602064 (+) |
| ankmy1 | ankmy1 | other | downstream | 598722 | 13096373 ~ 13111706 (+) |
| aqp12 | LOC108271384,LOC108424976 | other | downstream | 738826 | 13236477 ~ 13239637 (+) |
| trnag-gcc_9 | NA | other | downstream | 752719 | 13250370 ~ 13250441 (+) |
