G180534


Basic Information

Item Value
gene id G180534
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12850960 ~ 12851179 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU213678
ctgttggtgccaaattctgtcCCTactatctgtgtgcctcagcagaaatcgagatttccagtcttcaactgttcagttttggcGAGTCTGTGCCCAcagcagcctcagctttctgttcttggctgacagaagtggaactcgacgtggccttctgctgttgtagcccatccaagtcaaggtttgatgtattgtgcgttctgagatgcttttctgcttgaAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU213678 True 220 lncRNA 0.49 1 12850960 12851179

Neighbor

gene id symbol gene type direction distance location
eps15l1a eps15l1 coding upstream 13112 12804314 ~ 12837848 (+)
zbtb37 zbtb37 coding upstream 118268 12722857 ~ 12732692 (+)
s1pr1 s1pr1,LOC107715096,LOC107592715 coding upstream 130531 12716584 ~ 12720429 (+)
slc30a7 slc30a7,LOC107588064 coding upstream 184950 12645186 ~ 12666010 (+)
vcam1b vcam1 coding upstream 227012 12615074 ~ 12623948 (+)
mrpl54 mrpl54 coding downstream 95861 12947040 ~ 12948807 (+)
malt2 LOC108270956,LOC108414270 coding downstream 99219 12950398 ~ 12974799 (+)
safb safb2,LOC108424984,LOC107757477,LOC107653619 coding downstream 125339 12976518 ~ 12990417 (+)
si:ch1073-396h14.1 LOC108271130 coding downstream 141085 12992264 ~ 13024225 (+)
tpm4a tpm4,tpm4a,LOC108424981,LOC103036175,LOC107561904,LOC107665514,LOC107757474,LOC107715082 coding downstream 214809 13065988 ~ 13085931 (+)
G180516 NA non-coding upstream 9678 12836868 ~ 12841282 (+)
G180268 NA non-coding upstream 168397 12654422 ~ 12682563 (+)
G180267 NA non-coding upstream 196745 12653796 ~ 12654215 (+)
G180246 NA non-coding upstream 353309 12496731 ~ 12497651 (+)
G180242 NA non-coding upstream 364216 12486506 ~ 12486744 (+)
G180695 NA non-coding downstream 284958 13136137 ~ 13203148 (+)
G180738 NA non-coding downstream 350692 13201871 ~ 13285070 (+)
G180833 NA non-coding downstream 448101 13299280 ~ 13302297 (+)
G180838 NA non-coding downstream 550708 13401887 ~ 13406255 (+)
G180926 NA non-coding downstream 596766 13447945 ~ 13448184 (+)
LOC117598398 NA other upstream 248896 12573157 ~ 12602064 (+)
cdc14ab cdc14a other upstream 289179 12512888 ~ 12561781 (+)
timm13 timm13,LOC107731338,LOC106573564,LOC107593051 other upstream 517279 12328052 ~ 12333681 (+)
G180121 NA other upstream 795211 12054958 ~ 12055749 (+)
G179758 psmd1 other upstream 1420063 11428613 ~ 11430897 (+)
ankmy1 ankmy1 other downstream 245194 13096373 ~ 13111706 (+)
aqp12 LOC108271384,LOC108424976 other downstream 385298 13236477 ~ 13239637 (+)
trnag-gcc_9 NA other downstream 399191 13250370 ~ 13250441 (+)
trnag-gcc_10 NA other downstream 404878 13256057 ~ 13256124 (+)
trnag-gcc_11 NA other downstream 406829 13258008 ~ 13258076 (+)

Expression


Co-expression Network