ankmy1 (ankmy1)


Basic Information

Item Value
gene id ankmy1
gene name ankmy1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13096373 ~ 13111706 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU213850
agagagagagagagagagagagagagagagagagagagagagagagttcgcCGCGGGAATTCTCGGTTGCTAAGTCCCGCGCTGCTGTAACTCGGTAAcccacacttaaacacactcgAGATGGATTTGTGATggagtgttttgtgtttttgacgCCAGGAGTCTAGCCCGCGGTGTAATCTCCATCAGCTCGAGCTCAGCTACACCCTcagctgaactgaactgaactctcCCGCGGTTCTCTTTGGAGCTCGAGACGCGCCGCACGCGCAAAGTTTCTCAGCGCAGTTCGACGCACGCGCGCTCCTAATTAACCACAGTCGTCAAGGTGTAGAATGTCCTCAAAGGGACGCAGAGTGTCCGAGGAGAAGAGGGGCCATGATGAAGGCCGGCTTGTGTGTGAGGAACGGCTCGGGAGTGCAGGAGTGGACGGACGGGTCCAGATATGAGGGAGAGTTCCTGAATGCGCTAAAACACGGCGACGGAGCTTTCACCTGGCCTAACGGAGAGtgTTATAAAGGCTCCTTCTACAAGGATTACCGCCATGGCAGAGGAACCTACTTCTGGCCAGATGGCTCTCAGTTCAAGGGAAGGTTTTATCTGAATCATAAAGAGGGCTATGGCGTCCATCTTTTCCCTGATGGAACCATTTTTGAGG
>XM_034308898.1
AGTCGCTCGCTTACAGAAATAACACTCGACCTGCTGTGTGGTGGCAGTGTGTCgttatgttttttaaagtgaaatgttttcGTAACTCGTCCGTTTAACATGGTGGTTTAGGTGTAGAATGTCCTCAAAGGGACGCAGAGTGTCCGAGGAGAAGAGGGGCCATGATGAAGGCCGGCTTGTGTGTGAGGAACGGCTCGGGAGTGCAGGAGTGGACGGACGGGTCCAGATATGAGGGAGAGTTCCTGAATGCGCTAAAACACGGCGACGGAGCTTTCACCTGGCCTAACGGAGAGtgTTATAAAGGCTCCTTCTACAAGGATTACCGCCATGGCAGAGGAACCTACTTCTGGCCAGATGGCTCTCAGTTCAAGGGAAGGTTTTATCTGAATCATAAAGAGGGCTATGGCGTCCATCTTTTCCCTGATGGAACCATTTTTGAGGGTCTGTACCATGCTAATGAGCGTTTCGGACCTGGAGTGATGTCATATCCTGATGGCCGCCAGGATGTTGGTCTATGGTACCGCCAGTGGCTACTGCGACTCTGCACCACTGTTAAGGGAGGCTTCACCTTAACGGACATCCCGGAACACATGGCCCGACTCACACGGCAAAACCTGACACAGATCAAGTCTCCGCCTTCCTTCACAACGGGGTCTTGTATGGAAAGCCAGAATTTCTTCACAGTTGACACATATCTGCTGAGCGACTCCTCTCATCAGGAGGACGAGCAGTTCATCCTTCCCCCAGGCATTGAGAGCTACTCCACCGACTCAGACCACCTGCCTATACCCCGGCGCCTGCGTCAAGAACTCGACTTGCACTTCTTTAACAGAAGCAATGTCAGCATGCCTTTGTTCTCTAATGGAGTACCTCTTCAGCAGAGAATGGAGGCTCACATCCACTCACACAGATTTGAGGTTGAGGATTTGGACTGGGATGTTGCCGCTGTCCTGGCTATGAACCGGGATCGCTTTGGATCTAAGGGCCCTCTGGAGCTCAGGTCAGAAAGGCTCATTAGAGAGGCATCGCTTGGTGACCTCCAGAAGGTCCAGAGCATCCTTAGAGATGGAAAAGTTCACCCGGATGTAGGTGATGTGAGCGGACACACTGCACTCATCGCAGCTACGGTCAGTTGTCATTATGATGTGATCAACATGCTGCTGGACAGTGGGGCCGATGTGAATAAGCTGAATGCTGAAGGGATGTCTGCTCTGGCTGTGTGCAGTGTCCTTTACTACCCACTCCATTCTCTACAAGAGACAGTGGCTGAAAAGACTTCTCAGGATGTCACCACAGACCCAGAGATCAGCGAGTCCTCAACCCTGGCAAACAGCCCACAGGGGGCTGCAGGTGAGGAAAGGCCAAAAGATGACGTTGATACAGAACTGTCAGTCACAGACAGCCAAACTAACCAGGTGAAGCCTGAAGAGTGCAGCACAGCTCAAAAGCCTGAAGCTCCCGAGCACGCTGAGGAAATTAAAACCACCAGTAAAGATGAAGTGGTTCATCAGCAGATGCAAAATGGGCAGGGCAGGGTGGTAGAGGCTTCTGCTTGCCGCCAAGGTGATGATGAGGGTGAAAATGTCCTTTCCgctgagaaagaggaaaaaattgACAGAAATAGGACCCCAGGAAAGGACCCTGGTTTTGACTTGGCTAGTTCTGTGACTAGCTTCCACACCGACACAACAGAGGACATCATGCAGCAGATGGCTGAGGTTCCTTGTGAAACTGGTCAGGTGTCATCTGCAGAAACTCAGGAGACAGTTCACAGGATGACTGTCATGAAAACTGAAAATGAGGCCTACTGGGCCACCATGAAGCTGCTGCTGGAGCGAGGAGCGGACCCAAACGTGTCCAGCATTCCGATGCCTGTCATTTTCCTGGCCATAAAAGCAGGCCACGTTGAAGCTGTGCAGAGGCTGCTAGAATGTGGCGCTCGCACAGACCTGCACTTAACAGCTGAGCAAAAGGGCCTGTACCCGCTCCATGTAGCAGCTGGACTAACTGGCCCAGAGGGTCCTAAGATCACAGAGCTGCTCCTGCATGCTGTTGCAGACCCTGGTGAAGCACAGGACTCCAGCGAAGTGTACGATCTGGACAAGaCCTCAAAGGAGGAGCAGGTGGGTGGTGGAAACTCGTCGTCCCTGGGTTCTGAACCCCCAACCTGCATTTATACATCCTCCGTAGAGGCACGTAAGGAAGGGGGAAGGACTCCACTTCACGTGGCCTGCCAAAGAGACACGGATTACGCAAATGCCAGAGATGTCGTCTCTATTCTTCTCTCCCACAAAGCAAGCACTGACCATCTGTGGAGCGGCCATTCCCCCCTCTCCCTGGCCATTGCCAGTGGCAACGACCTTGCTGTGGATGAGCTTCTGGCTGCTGGAGCCGATCCTAACCTGCCCCTCTCCTGCCGAGTGGGCAGTGCACTGTGTGCTGCCGCCAACATCCACTACAACTCTGGGCCTCGCCTGCGCAACAGAATCAAACTGGTCGAGAAGCTGGTAAAGGCTGGTGCCAATATCCTGATGCCTGTAATGGTTGGCGAGAGGAGCAGGAGTGCTACAGGAACAGCAGTGGATTATGCTTATTATATGTTTAACAAGGACCGGCGAGTTGCTCACATCCCTTACCATGCTCTAAAACAGCAAGAGAGGGAGGCCTACAACGGCCGCCGACAGCTCATCACCATGATGGCAGAGCTGATGAGACAAGCTGCCACCAGCATGGAGAAGCAGCGCCTGGAAATGAAAAGAGCCAAGGCATACACAGTGAGTGTTAGTCCCACAGACAAGTTTGTCTTTACTGGAATAGGAGCCACACCCCCTGCAGATAGAACAAGAGTGCATATAGCTATAGAGGAGCAAAGAGAATCAGCAAACGTGTCTACAGCTCAAAAGAGATCACTAAGCAAAGGTGAAGCTAAGACCTTGACTGTGAGgaAACCCTTATTTAAGTACTGTTACCAGTGCGGCCGTTCAGCGTGGGTGGTGTTGACGCCCTGTAGCCGCTGCCACGAAGTGTTCTACTGCAGTAAGACATGTAAGCTGAAGGCCTGGAATGAACGCCATAAAGAAGAGTGTGTCCGCGTGCCAGGAAGTGGACGTCCTGAGGGTAGTCATATGTCTGGTGACCAGCGGTGCCTTCTTTCAAGCAAAAGCTCCAGGAAAAGCAACGATCTGAATTTCAAATTGGATAAACCAAACTCAAGCAAGGCAGCATCATACACCTTCACACATCAGTATCACCCTCAAgaaaattacagttttatttgatTGTGTAGGTGAAAGAAAGactcaacacaacacaacagaagTGGGGAGATTTTCATTGTTACGATGAACTTTTGGATTTTAACCCAAGCCTGGGTCTTGCTGATCTTGCACCCTTCTTCCAACACACCTGACTCTAACATTCAGTTCCTCCTAAAAGTATTGATTAACAGGGATCAGGGTGTTAAATTATGTTGGAGTTAAACTTCAgttatttcatgtcattttgcgtttgattccttttttttgtaatacgCATCCATTGTATTCACAGACTCATCAGTAACTGACCAAAAAATATTGATCACTTTCCCCATGAGCTATTGACATTTAAACATAGTAGTACAATTTATCAAAAATGTCCTACGCTTAGAATTACGCAAGGTAGTTTAGGTGATATAACTCCTGTCAAGCAGAATAAAAAGCAGTAGTCAACATGATCTAATAGCGGATCATAGCTTTCTCTGTTAATGCAGAAAAGATGGTGACACTTTATCAAAAAGAGTGTGATTGTGTCTCATTCATTTAGCATCCATTCATTTCCATACAGTTCTAATCATGACATGAGAGATTCATTCTTGACCTActtatttcagttcagttaaacTGTACATTTCTATTTCACAAACTATTTCAGCCTCTTCagtgatccacacacacac

Function

symbol description
ankmy1 Predicted to enable metal ion binding activity. Orthologous to human ANKMY1 (ankyrin repeat and MYND domain containing 1).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K24631 ANKMY1, ZMYD13; ankyrin repeat and MYND domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU213850 False 658 TUCP 0.53 3 13096373 13098156
XM_034308898.1 True 3937 mRNA 0.49 19 13096712 13111706

Neighbor

gene id symbol gene type direction distance location
hsh2d NA coding upstream 1410 13088273 ~ 13094963 (+)
tpm4a tpm4,tpm4a,LOC108424981,LOC103036175,LOC107561904,LOC107665514,LOC107757474,LOC107715082 coding upstream 10442 13065988 ~ 13085931 (+)
si:ch1073-396h14.1 LOC108271130 coding upstream 72148 12992264 ~ 13024225 (+)
safb safb2,LOC108424984,LOC107757477,LOC107653619 coding upstream 105956 12976518 ~ 12990417 (+)
malt2 LOC108270956,LOC108414270 coding upstream 121574 12950398 ~ 12974799 (+)
LOC117598427 NA coding downstream 166252 13277958 ~ 13280512 (+)
cep19 cep19 coding downstream 196735 13308441 ~ 13313447 (+)
impact impact coding downstream 208237 13319943 ~ 13368258 (+)
LOC113532271 hrh4,LOC103041953,LOC107678092,LOC108424938,LOC107559824 coding downstream 268090 13379796 ~ 13397775 (+)
rpl36 rpl36,LOC106560598 coding downstream 314964 13426670 ~ 13430143 (+)
G180534 NA non-coding upstream 245194 12850960 ~ 12851179 (+)
G180516 NA non-coding upstream 255091 12836868 ~ 12841282 (+)
G180268 NA non-coding upstream 413810 12654422 ~ 12682563 (+)
G180267 NA non-coding upstream 442158 12653796 ~ 12654215 (+)
G180246 NA non-coding upstream 598722 12496731 ~ 12497651 (+)
G180695 NA non-coding downstream 24431 13136137 ~ 13203148 (+)
G180738 NA non-coding downstream 90165 13201871 ~ 13285070 (+)
G180833 NA non-coding downstream 187574 13299280 ~ 13302297 (+)
G180838 NA non-coding downstream 290181 13401887 ~ 13406255 (+)
G180926 NA non-coding downstream 336239 13447945 ~ 13448184 (+)
LOC117598398 NA other upstream 494309 12573157 ~ 12602064 (+)
cdc14ab cdc14a other upstream 534592 12512888 ~ 12561781 (+)
timm13 timm13,LOC107731338,LOC106573564,LOC107593051 other upstream 762692 12328052 ~ 12333681 (+)
G180121 NA other upstream 1040624 12054958 ~ 12055749 (+)
G179758 psmd1 other upstream 1665476 11428613 ~ 11430897 (+)
aqp12 LOC108271384,LOC108424976 other downstream 124771 13236477 ~ 13239637 (+)
trnag-gcc_9 NA other downstream 138664 13250370 ~ 13250441 (+)
trnag-gcc_10 NA other downstream 144351 13256057 ~ 13256124 (+)
trnag-gcc_11 NA other downstream 146302 13258008 ~ 13258076 (+)
trnag-gcc_12 NA other downstream 152118 13263824 ~ 13263894 (+)

Expression


Co-expression Network