aqp12 (LOC108271384,LOC108424976)


Basic Information

Item Value
gene id aqp12
gene name LOC108271384,LOC108424976
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13236477 ~ 13239637 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU213946
TGGGAAAGGATTTCGCGAACGTCATTAAAATGCTGAATGAACGTGTCTCTATAATCTTGTTATGAAAATATGGATGTATTTAAAGTGTGACAACCCACAAGCACCGTTTAGCTACATGCTACATCTCTTGAACTTTTGTGCATGTATTATGTACAATTTTGAAGTTTACACATTGCTTGCCTTTTCTTAACAGAAAGAAAGCTATTTGGTCTACAATATGTCAGGATGACAAAGTCAATATATAGCACGCAATGTCAATGTTTTGTCCAACCACTCGTCTTTTTTTGCGCTGTTTTGTGTAATAGGGAGACAATTTATTCTCGCCACACTGCCAGATTTTCCACATGGCCTTGAGGGGGTTTGGCTCAAGATATGAAAACGCAAAGGAAACAAGTACACTTCTGCTTACGTCAACCCATCGCTTGCTTATGTGCTTACTTTCAATTGTCCTGGACACACCTTCTGGGAATATGCTGTAGTCTACTGGCTTGGGCCCCTCATTGGCATGACCCTGGCATTGCTTCTCTACATGGGTAACATCCCTTTGCTTTTCACCAAGAACCTGCTTTTCTCAAAAAAGGCACGCCATCGTcttccaaaaagaaaaacatctgaaGAGAAAAGTTCATGAGACACTGTGCATTAActtcaaaatataaatttactttaaaatatcaTTACATATTTCCACCTTAATGCAGAATTCTGATATGCCAAGGTCACATCCTAAGCTGATggctttataatatttatttactagaGGGGGGAAAAAGCTCACCAGG
>XM_026930329.2
CTTTGATAAGAAACTTGCATGTGAATTTGCCACGTTATCACAGACTGGGAGTAAATACAGGCCTGGGGAGCTcatatttctttccttcctctgtaACTTAACCACCGCTGCACTGTCCTTGTAATGTCAGGCCTTAACATAACACTGGGTTACTTCATCAGTGTAGTGGTAGTATGTGGATTTGCCAAAGCTCTGGTGACACAATGGAGGCCACGATGGAGCTTTCTTTCGGAGTTTATTGCAGCTTTTGCACTTGCAGCATTTCGGCTGGAAGTGCAAACCATTTCCGAGATTGGTCAGTGGGCTGGAGGCCTGGGGCAGGACGTTACCCTCACCATGCTTTTCCTTGCCTTGATTGTCCACGGAGTCATCATGCAAGGAGTCACTGGAAACCCTTCAGTTACTCTAATGGGGTACTTACAAAAAGAGACAGGAGCAGTATCCTCTTCTCTTAGCATAGCAGCTCAGCTTGGAGGTGCCCAGCTTGCCCTGCTCTTTGCCGGGTGGTATTGGGCGATGGAGCTCACGGACATGCATATGATCAAGGTCATGATGATGACTCAGTGCAGTTCATCACTGAATGTGTCCCTGATACAGGGGACCATCACAGAGGTTGTAAGTGCACTGTTTTTTCACCTGGTGGACCTCAGCCTTCGCTGCAGGTCACAGCTGCTCCGGATTCCCATCCTGGCCCTGCTGCTCACCTTCCTCTATTACACAGGAAACAAGTACACTTCTGCTTACGTCAACCCATCGCTTGCTTATGTGCTTACTTTCAATTGTCCTGGACACACCTTCTGGGAATATGCTGTAGTCTACTGGCTTGGGCCCCTCATTGGCATGACCCTGGCATTGCTTCTCTACATGGGTAACATCCCTTTGCTTTTCACCAAGAACCTGCTTTTCTCAAAAAAGGCACGCCATCGTcttccaaaaagaaaaacatctgaaGAGAAAAGTTCATGAGACACTGTGCATTAActtcaaaatataaatttactttaaaatatcaTTACATATTTCCACCTTAATGCAGAATTCTGATATGCCAAGGTCACATCCTAAGCTGATggctttataatatttatttactagaGGGGGGAAAAAGCTCACCAGGCAAGAAAAACAAgtagttttatacattttgcaagaataaaatatgcatgtgtca

Function

NR:

description
aquaporin-12-like

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K09871 AQP12; aquaporin-12

RNA

RNA id representative length rna type GC content exon number start site end site
TU213946 False 782 lncRNA 0.39 4 13236477 13239583
XM_026930329.2 True 1171 mRNA 0.45 3 13236998 13239637

Neighbor

gene id symbol gene type direction distance location
hsh2d NA coding upstream 141514 13088273 ~ 13094963 (+)
tpm4a tpm4,tpm4a,LOC108424981,LOC103036175,LOC107561904,LOC107665514,LOC107757474,LOC107715082 coding upstream 150546 13065988 ~ 13085931 (+)
si:ch1073-396h14.1 LOC108271130 coding upstream 212252 12992264 ~ 13024225 (+)
safb safb2,LOC108424984,LOC107757477,LOC107653619 coding upstream 246060 12976518 ~ 12990417 (+)
malt2 LOC108270956,LOC108414270 coding upstream 261678 12950398 ~ 12974799 (+)
LOC117598427 NA coding downstream 38321 13277958 ~ 13280512 (+)
cep19 cep19 coding downstream 68804 13308441 ~ 13313447 (+)
impact impact coding downstream 80306 13319943 ~ 13368258 (+)
LOC113532271 hrh4,LOC103041953,LOC107678092,LOC108424938,LOC107559824 coding downstream 140159 13379796 ~ 13397775 (+)
rpl36 rpl36,LOC106560598 coding downstream 187033 13426670 ~ 13430143 (+)
G180695 NA non-coding upstream 33329 13136137 ~ 13203148 (+)
G180534 NA non-coding upstream 385298 12850960 ~ 12851179 (+)
G180516 NA non-coding upstream 395195 12836868 ~ 12841282 (+)
G180268 NA non-coding upstream 553914 12654422 ~ 12682563 (+)
G180267 NA non-coding upstream 582262 12653796 ~ 12654215 (+)
G180833 NA non-coding downstream 59643 13299280 ~ 13302297 (+)
G180838 NA non-coding downstream 162250 13401887 ~ 13406255 (+)
G180926 NA non-coding downstream 208308 13447945 ~ 13448184 (+)
G180945 NA non-coding downstream 390058 13629695 ~ 13640963 (+)
G181136 NA non-coding downstream 858023 14097660 ~ 14100987 (+)
ankmy1 ankmy1 other upstream 124771 13096373 ~ 13111706 (+)
LOC117598398 NA other upstream 634413 12573157 ~ 12602064 (+)
cdc14ab cdc14a other upstream 674696 12512888 ~ 12561781 (+)
timm13 timm13,LOC107731338,LOC106573564,LOC107593051 other upstream 902796 12328052 ~ 12333681 (+)
G180121 NA other upstream 1180728 12054958 ~ 12055749 (+)
trnag-gcc_9 NA other downstream 10733 13250370 ~ 13250441 (+)
trnag-gcc_10 NA other downstream 16420 13256057 ~ 13256124 (+)
trnag-gcc_11 NA other downstream 18371 13258008 ~ 13258076 (+)
trnag-gcc_12 NA other downstream 24187 13263824 ~ 13263894 (+)
trnag-gcc_13 NA other downstream 26127 13265764 ~ 13265835 (+)

Expression


Co-expression Network