G181157


Basic Information

Item Value
gene id G181157
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14145873 ~ 14293381 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU214419
acacacacacacacacacacacacacacacacacacacacacacacacaaagtgctcAGAGTGGCTCAATCAATAATTGTGGCGGTGCCTGGACAGGAACGAGGGACtgggaggaagaaaaagaagcgAGTGAGAGTGACAGCGCTGCTGTAAATCAGACTAAAGCCGCAGTGTACGAGTCTTTACAAGCGAACCACAGGGGAAACTTCACCGAGAGTGTACACTACACTGAGCACAGAGTGCGCACTACAGCTGGGAATCTCTAGGGGCCTCACCAAACAAACAatctgattttaatttaaatcaccACAGTGAGATAATAAGCTGATCCTTTATGCACCTTAGGAGCATTTGGAATTTCAATTTGTATAGCCAAATTATGATTCCCCCTGTATGAGCACTTGCTTTagttatttattctttttgttttacaatattttgaCTGGAGCAATCAGAACAAATTACATTGTTTGAAAAGGCTactatttcctttttattttttatttacgtATTAATAGGAGAAAATGTCATTGTTTAAGATTCTACACATCGCTGCATATTGGGTATAAATTATACTGCATACTGGGTATAAATTTTCTAGGTAAATACAAAAAAGTGAGTGATATTACATGTACATTCCCACAAGAGTATTTAGAGGCAtgtttctgtggctgaatctcaaattaCTTTCCACTGGGAGTATAGTGCACTTGTTATACTCTATATAGTGAGTATATATAGTGCATATAAagttttttaattacttttttattttaaatttgaattaaagTTTACAGTTGAAATTAGAATGCAATTTTTAAAGCAATTTGACATCTATGTTTATTCATCCAACAAAAATGTTCAACATTTGATCaatttaggagaaaaaaaaccttgctgGTGCTGtgattggtattttttttttagatattaaaaGCACTTACTTAAAATTCTGAACCATTTTCTATCAGCTCCGTTCCCACCATTTTTCCTGCATTCCCTAAGGATGATTTCAAGCCTAGATGTGAAATTTGCTTCATTAGTTTAATTAAGAGATTTGAACGCACAGATGTAAAAGTCTGATTAAGATGTTTGGTGCATCAATGCACAGTTGTGATGCGTAAAGAATCGattctttttcctcctctcatTTAACGAGCGAGAGCTGATCGATCACTTCTCAGCCCATCTAACGTTCTAAACATTACACAACTgtgactgatttttatttatgaagtcACCCAGCACCAGAACCATCTCAAACTGCATtaacttcacactcacactctgtaGCAGAGCATCAGCGCCACCTAGTGACCACTTACAGAATTTCTCAGAGCCTAAAAGTCATCTGCAAGAGAGGCATCTTTCGAAAGCTGCAGGGGCATCTGGTGTTATTTCTGGACACTTGCATCAGAAATATGCAGCAAACGCACCAGAATTCTGGGTAACTCTTCACACCTTTTATTCTGACAAACTCTTCACACCCTTGACCATCGTACAGGAAGCAGCGCAGCATCGTGTTGCTACTAGGGGTGTAACTATGCACTCTCCACATTTTGATTAGATTCATGAAACTGGCTGAAtgattcgattcaattcaattcaatctcagaatattttgtacaaaattttaatgaagaaaatgaatgactgaaaagactccttttttttatttctgaatcataaacattgcaaaacaatgtgcatttttgcctgtataaaactaaaaatcaaaaattgcCATGAACAGAGGTTTCaaatttataaaacaaacaaaatctactacaggttcaccttgtctaaaaaataaataaataaatgtatacattctCGTGTCACGCTGCATCGTTACACCCCTCAGTTACTACTGAATTGttttaagagaaaaataaaaccgGCCTAAATTTCCCCTTTAACTGGAAACGTAGGCTGATCAACTCACATGTTCAGTGTCCAGATTCTGCTTCATTCTGTACTGAAGCTACAAGACTAATGAAGCTAACAAGAAAAGGAAGCTTGTGGCTACCAGACCTGcttttttattctaatattttttaaaaatacatatataaatcaAATTGGGACGACAGTACCATACAAATCTCTTCTACTGTTCAATTCCCTCTACAAACCTGAGCCTGATGCTGGTGTGACACCAAACTACGTGCTGAGGAACTAAGTGATTCAGCTTCAGAATGGACGCCTGGTTTTAGCTCCGTCCTTCTGTTCATTCTATAGACGTGATGATTTAGGCCTGCAGTTTGGACAAGGCTAAACTGGTAGCAATAAGACTGCCTTCTTTGCTAGCTACATTAACCTCATAGCTCCTGCCCAAACATGTCATGGCTGATAGActatattgtgtacattttatttttggctccATTGTGTTTTTAAACGATTAAGTGACAAGCGACACTCAACAGCTGCCCCAATTTCAGAGGAACTGAAAGTTCTTTTTCTAGTCTGCTGCTTTAGAAAAAACCCGCTTTAAGTACGTTTGCAGTGTATTTACTTTACTGTTGGTTGTAGCGTGAAGTGATCTCTCTTCTACCACAGAGATGCTgcattcttgaatctgatttgttagaaggttttgattaattttctataacagcagcactgacagtatTCCTGATAGTTGTTCTAACAGTTTCTAAAGTAACAAGGTAAACAGGcatccacataaacaaatttttGAAAAGTGTGTATATGGGgaggttttctgtaagtaatgcttaacatttatggaaggagtctccagtgccagcgctttgtaacattcagtatGTTTTCCAAGTCATCAGGATAAGAGGATTTTAAGCTTTGCAGGGTATctaggtaacatgacaagctgtttttttttttttttttttttttttttttttttttttttaaccagatgACCCAAGAACGGCCTGAAGAAAGAACAATAGAGGCTAGAAATCCTGGCACCAATGCAGGCTCATAAGAGTAGAGCACTTGTTCAAAAAGGAAACACTCTCATCGGTACGCCAGGACCTCTTCCCCTCAGAATGAAGTGGGCTGGCCAGTGAAGCCGAATGGTGACCTGGTCCATGGGGAATGCTCCctcactctcattctttctcttcacctttttctctctctctcttccatttCTGGGGGGTTGTAGATCCGGTTATATTTAGCTTTATTATGATTGGCGAACATTGTTGTTTTGTCCCTCAGTTTCTTATTTGTCCTCTGCAGTACACAATCTACAGCTTTCTGTAGCTCACCAGCCACTGAGACTAATCATTTTCCCAATTTAGTAGCTAGTCAGCTCTTATACTAGCCAAAACATTAACAGTTGCAACTGACATTTTTACTTTATCTTCTCCTCAACACTGATAGTCTTAACACAAGCTTGAGGTagactcttagaaaaaaagactTCCTTAAGGGTGCTTTGGATAGTTTGTCAAAAGATTATTGCCAGTGTTCTTTTGTTTACTGATTCATTTAATTACGTGCACTGTGAAACGAAACTGAATATCAAATGAACCAAAAGGATCGattttgctctgatttggaCACTGCAAACAGGCTAATACTGTAGGTGAGAAACCACTGTAAAATTCTCGGTTGAAGAGTAACCCCAGTCACACCCCAGTTTTCCTTTACGCAGTGTTTCATTCTTGGGTTCTGTCAGTTGACCTATTTTAAGTGCAAATAAATCCATCTTTAAATACCTGGCAATGAGATCTGATGAAACTGATGAAGGACATTTTAGCTTatgaacaaaaagaaacactttcTGATAAGCTGTACGGTTAACTTTGGTAAATTACTCCAATAAAAAAGGGCTATTCGCTAGTGTCGGATTTTACTGCAGTTTTACTTCTAGATTTTACTTTGTGCATGACTGacacagcaaacacaaagtGAGCAAAGTTTCATTATccgtctctttctttctgctccTTTTCTCTATCATATAACTCACATGGCTTTACTTCTGAAAAGAACTACAGTCTGGTTTCAATCAAATACATCACTCATCTCTCTTCTAACACAGAGCCAAAATAGTTCTTGTCATTAAAGAGTACCTAGTGCCCAACACGAAGCGCCTGGGCAAGTCTGATGCTCCGATCATGATCCTCCAGCTCTGAGcgcacaaatgtgtgtgtgtgtgtgctttgtatTCAAGCCAGGCTTAAGAGCTGTCTCCAGGTCTGATATTTAGGCGTTGGGGTAAAAAAAGCCAGTGGAATTTCACTGACTTTAAAGTCATTGAGCAGAGACCTCACGGAGTCTTTTATGAAGTCTGCACGGCAGTCAGGAAACTGGTAAAGACCGGCCAAAGCAGTGACGTGGAAATAAGCTCAGAGGCAAGGTGAGGCTCTTTCTGAGCTAAAGGAATGGGCAGATTATCTTTGTTTGATCACTTCATTCCACTCAAATCCCTCAAATTTGCAAACGTAGGCCTTTGTCATTTTCATTGTGTCATTTATGTTGGGAAACATGGCCTAAGGACAACATTCCAACATGTCCACTTTTAAAGAGGCATCACTATCAGGGAATTACGTGAGGCTAAACCCATAGCCTCAGGGTCCTTGTGGAGATCGTCTGGAGACAACCAGCTGTTGGAGAAACCAGCTTCAGACTAGACCTGCTCAGGCTTCGTGAGGGGAGTGTCATATTAAAACTGCGCCATTACACAGTCTGACTGGTCCTTAGTTCAGTCTCATTCAGACACCTTGGCCAGACTCCAATGCTGCACTTGTAGTCTTCATGGCATGTCCTATTCCTCATTTTGTGATCCAAATGTCAATGCAGACTCATTTGCAGTCAGAAGTGGCCTTTTACCCAAAAATGCATAAGATATTGGTAAGACAGGATCATAGTAGACTACGCTATGTACCATATTCTCGGTTTTACCCCTTTGCACCATTGAAGACTCGAGGCCTGGGGCACCACTGCCCTGTCGGCTTGGAGGATGATTGCAGGGTTCATTGAAACGTTTGAGATGGTGGTGAGGAGGAAAAGACCACGTTAGTTGCCCTGGATTATCGATGGAGCTGAGGTGAAGATCAGTTCACATTTCACTCTCTGTGCCTCAATCTCTGTCTCTGACTATTAGATTTTTCTGCTTTAAGGCTGTGTTATAGTGTGGCATATGGCTTGTCATTGGCTGCTTCAAAGAATGCAGCTGTCACATACATTGCATAATCACACTCATGAGAACACACTCATGTGGTGCTACATCTGCTGTCAGACTACAAAAAATGGTCTGTTGTTGCAGTAATTTCTGTCAGCTGAAACAGCAGGTGATAAACTCCAAATAAAGCTTTAGGCAGCTGTCTCTTGGGTGAATAGATTTAATTCAGCTCAATATTTGGCTGCATAGATCACAATTGTGTGTCACATTCAACTGATATTGTGACTTAAATAATAACTGACTGCAAACTCCACTGCATTTCAACAGCTATTTTCATATTCTAACCTGCTGACTAGGGCTGAGTCATCTGTAGTATTGTTTTTGATTTCCTCAATGATAACTAAAGTTGGCTGGAACATTAACATTGTAGTTTTTAACTCATTGACATTTTCGGGTTTCCAAAAAAGTTATGACTGCAGAGGCACTTTTATTTGACTGCACTGGCCATACTAAAGAGTACTAGACCTTTGACAGCCATGACTGCATACTGTGATGCACATGTTTATCTACTTGTTTTTAAAACCAGAAGATCATGAATTTGAACCCTGGAGATAGCACCGCCATCTGTGGCCTGGAGCCAAGGAGAATTGgccatgttctctgggtgggagggatggagttactctctccctgtcaatcagtgcaacactagccaatcgtggtcAGTTGTGCGCTCATGTATATGAAAAAGGGAGGATAGTgtttttctctgagtgtgttatgctgtcctgtgacacagcatgagcagcagtccAAAAAGATCCAGtagctggcttcacatgtctcagaggaaacatGTTAGTAGctgttggtagctgtcgtgttatggggagagctggctggtggttGGAAATTGGCAGATTAAAgtacagtgtgaaaaaaaaactatttttgtttggTTAAATAATTGCCATAAATGCACTTTTTGAAAAAAGGTACTCTAGATCTCTAGATCACCTCTAGATCAGGTGTCTCATCTCGTAGCCAGCAACATTTTTCGAAACATGGATTTTGATCAACGCACGAAAAAAAGGTCCGTAGTTCAGCGACTTCAGTTTTCTAAACACAAAACAGCTCAaattctgtagcagatcctctatCATGGCCTGCTGTGGCATGTTGAGGCcaaaacatgcatttatgtaaattatttagctaaaggCAACTCATCAAGAAAGAATCAAGAATGTTTTCACAGACATAGATTTACCCTCTCTTGTCTTATTAGTAGAGTCACTAAAATATAGTAGTTGTttaaaaaccactgacaagaAAAACAGAATGTAAAGACAACTGGATGGAGAAGTGAGTTTATTCTCCACTACGAGAGTTCATGGCACTAGTCAAAAGCCGTAAGGTGcgactatgaaacaaaacagaaccaCTTCAAACTttagccatgaactaatcatAAATGGGTAAGCATTGAAATGTAACTGTTACTAGCATGTTAGTTGTTTATCCAGCCCTTTGTAAGCAAGTAATTTTATATAGCTTaaatttcacaaattttagttgattACCCCTGCTCTACAGTACATCATTTGCACCTTGGGCATGTTCACCCAGGAAATTAAACGTAGTGTACAGTTAAAACTCATTTAGGTGCATGATAAGATCTAATGCACCATGGTTTTaccttaaatattttacagagacacttcatttattttccaagGTGATAGATATATACCAAATGTACAAAGCACAGACCCTAAAAGGCTCCACATCAGTGAGAGGAAATGCTACagcttttttctgagagtgtatttaTGGTTTCAGCAGTGAATAAAATTTCCCCTTTAGCCATTATCATGCAGCCCCAGCACTGACGTATGACGCAACTCAACACAGATCTAATCCTTGTCCTGTGTGACTTTCATGTGTAAATAACCCTCATCAGTGTATGACCTCTGACCTTGGCAGGCGCCACTGCGGATGTTGGGGATGAACCCTCGGCGGCAGGGGTGTGGCTGGGCAGGGCACATCTCGCAAGGATGACCCCAAGCTCGGCCGATGGTGGCGCAGCACAGCGTCTTGGTGCACACAATGCCACTCAGCTGACCCTGACACATCTGGTTGCTGACCTGTGTGAAGCATGGTCCGGTCCTGTAGTCTGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214419 True 7307 lncRNA 0.40 4 14145873 14293381

Neighbor

gene id symbol gene type direction distance location
gipc3 gipc3,LOC108270865,LOC108424935,LOC100702370,LOC102212133,LOC107559818,LOC107678090 coding upstream 632999 13496678 ~ 13512874 (+)
lim2.2 LOC108270866,LOC100701835,LOC102794991,LOC101061816,LOC101468118 coding upstream 677396 13462280 ~ 13468477 (+)
ftsj3 ftsj3 coding upstream 684764 13449459 ~ 13461109 (+)
rpl36 rpl36,LOC106560598 coding upstream 715730 13426670 ~ 13430143 (+)
LOC113532271 hrh4,LOC103041953,LOC107678092,LOC108424938,LOC107559824 coding upstream 748098 13379796 ~ 13397775 (+)
cers4a cers4 coding downstream 49857 14343238 ~ 14358867 (+)
c11h19orf44 c10h19orf44 coding downstream 90076 14383457 ~ 14390553 (+)
atcaya atcay,LOC108270591,LOC108430235,LOC103374683 coding downstream 169807 14463188 ~ 14469987 (+)
mibp mibp,LOC108271439,LOC103035840,LOC108430237,LOC107734093,LOC107702642,LOC107566367,LOC107698603 coding downstream 179961 14473342 ~ 14477751 (+)
mydgf mydgf,LOC107566370 coding downstream 188176 14481557 ~ 14487812 (+)
G181136 NA non-coding upstream 44886 14097660 ~ 14100987 (+)
G180945 NA non-coding upstream 504910 13629695 ~ 13640963 (+)
G180926 NA non-coding upstream 697689 13447945 ~ 13448184 (+)
G180838 NA non-coding upstream 739618 13401887 ~ 13406255 (+)
G180833 NA non-coding upstream 843576 13299280 ~ 13302297 (+)
G181233 LOC108271251 non-coding downstream 67407 14360788 ~ 14361372 (+)
G181236 calr3,LOC107702625,LOC102296215,LOC107717161,LOC107723933 non-coding downstream 82112 14375493 ~ 14379473 (+)
G181252 NA non-coding downstream 116341 14409722 ~ 14410077 (+)
G181300 NA non-coding downstream 143994 14437375 ~ 14438009 (+)
G181475 stx6,LOC107715114,LOC107669815,LOC107653648 non-coding downstream 371320 14664701 ~ 14665064 (+)
G180936 NA other upstream 649888 13495590 ~ 13495985 (+)
G180834 NA other upstream 840157 13301255 ~ 13305716 (+)
trnag-gcc_17 NA other upstream 870317 13275486 ~ 13275556 (+)
trnag-gcc_16 NA other upstream 872256 13273548 ~ 13273617 (+)
trnag-gcc_15 NA other upstream 876144 13269656 ~ 13269729 (+)
LOC113540185 NA other downstream 268174 14561555 ~ 14563010 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other downstream 296499 14589880 ~ 14599979 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other downstream 329162 14622543 ~ 14649685 (+)
pdzk1ip1 NA other downstream 415546 14708927 ~ 14711727 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other downstream 1375417 15668798 ~ 15673982 (+)

Expression


Co-expression Network