G181236 (calr3,LOC107702625,LOC102296215,LOC107717161,LOC107723933)


Basic Information

Item Value
gene id G181236
gene name calr3,LOC107702625,LOC102296215,LOC107717161,LOC107723933
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14375493 ~ 14379473 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU214515
AAGAAAatcgtttatttaaaaaaagtgcaaataacCTAAAAATGATACACTCATCATTTTTCCCCCTCAAGACATCATGGCAATAATCCAAACTccatttaatttagttttaccTGTGACTTGGGTGGGAATTGGAGAAGCCGGGTAGCagcagtagaaaaaaaaaatccagggcACGGCTAATATCTCATAGGATTAATTTATGATAGAAACCAAAGGGGCGCAGCGGTGGGAAAACAATCCTCACcaactgaactgaaataaaaccACAGCACACCCTTACTCTATTGTCCTGGTTGGGTAGTTAGAGCCCACAGAAAGAGCTTCACTGAGTGGGGGAGGATCAGTAGGTTACTTCTAAGATATGCTCGAAAGCTCTGATGCTGTCTACAACTCATCTTTAGTAGCCTTATCTTGGTCATCTTCTTCATCGTCCAGCAGATTGGGCTCCTCTGGAGTTTCCTCCTCCGTGACCTCTTCTGGTTCGTCTTCCGGTTCATCGTAGCCTTCCTCGTCACCTTCGCTTTCCTTCTtgttcttctcctcctcttccctctgtttcctctcctcctcttcctgcttATCCTTCATCTTCTTCTCTGGGCCCTTTGTGGCTCCCCATGTCTCTTTGCCGATATCCTCTGCCTCCTTGACGTCGTCAGTGATTAGGAAGTTATCAAAGATGGTACCGGATTTCACCTGCCACAGGTCCAATCCGATAACTCCAATGTTGTCATACTTGTAAACTGAGTTATCTGGTGTGTAATCTGGGTTGTCGATCTCAGGATGCTCCCACGTTCCTTTGTAGTTGGGATTGTTGATCTGCTTAGGTTTCCATTCACcCTTGTACTCGGGGTTAGGGATCATGGGTGGCTCCCACTCGCCGTCCATGTCTTCATCCCAGTCATCGGGCTTCTTGGCATCAGGATCAGGAATGTTCTCGGGTTTATCCCAGTCCTCTGGTTTTGTGTCCTCAGGATCGTCAATTTTGGCACGGTCGTCCCAGTCCTCTGGCTTCTTTGCCTCTGGATCCTTGATCTTTTTGGGAGGAAGGAAGTCCCAGTCCTCCTCCAGAGAGCCTGACTCCACTTTCTCATTGTTGATTTTCACTTCGTAGGTCTGGTCGGGCCGCAGGATCAGCGTGTACAGGTTTGTGAACTCATCA

Function

symbol description
calr3 Predicted to enable several functions, including calcium ion binding activity; protein folding chaperone; and unfolded protein binding activity. Predicted to be involved in protein folding and ubiquitin-dependent ERAD pathway. Located in endoplasmic reticulum lumen and nuclear envelope.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214515 True 1165 lncRNA 0.47 5 14375493 14379473

Neighbor

gene id symbol gene type direction distance location
cers4a cers4 coding upstream 16626 14343238 ~ 14358867 (+)
timm44 timm44,LOC108441293,LOC107660209,LOC107561596,LOC107704494 coding upstream 171761 14189261 ~ 14203732 (+)
ticam1 NA coding upstream 188162 14183219 ~ 14187331 (+)
gipc3 gipc3,LOC108270865,LOC108424935,LOC100702370,LOC102212133,LOC107559818,LOC107678090 coding upstream 862619 13496678 ~ 13512874 (+)
lim2.2 LOC108270866,LOC100701835,LOC102794991,LOC101061816,LOC101468118 coding upstream 907016 13462280 ~ 13468477 (+)
c11h19orf44 c10h19orf44 coding downstream 3984 14383457 ~ 14390553 (+)
atcaya atcay,LOC108270591,LOC108430235,LOC103374683 coding downstream 83715 14463188 ~ 14469987 (+)
mibp mibp,LOC108271439,LOC103035840,LOC108430237,LOC107734093,LOC107702642,LOC107566367,LOC107698603 coding downstream 93869 14473342 ~ 14477751 (+)
mydgf mydgf,LOC107566370 coding downstream 102084 14481557 ~ 14487812 (+)
LOC113527219 LOC108270689,LOC108429511,LOC107653644,LOC107715111,LOC107588053,LOC103463808,LOC100711005,LOC106955782 coding downstream 220957 14600430 ~ 14611565 (+)
G181233 LOC108271251 non-coding upstream 14121 14360788 ~ 14361372 (+)
G181157 NA non-coding upstream 82112 14145873 ~ 14293381 (+)
G181136 NA non-coding upstream 274506 14097660 ~ 14100987 (+)
G180945 NA non-coding upstream 734530 13629695 ~ 13640963 (+)
G180926 NA non-coding upstream 927309 13447945 ~ 13448184 (+)
G181252 NA non-coding downstream 30249 14409722 ~ 14410077 (+)
G181300 NA non-coding downstream 57902 14437375 ~ 14438009 (+)
G181475 stx6,LOC107715114,LOC107669815,LOC107653648 non-coding downstream 285228 14664701 ~ 14665064 (+)
G181588 NA non-coding downstream 488454 14867927 ~ 14930862 (+)
G181599 NA non-coding downstream 581412 14960885 ~ 14977551 (+)
LOC113531387 ctxn1 other upstream 134952 14222218 ~ 14240541 (+)
G181175 uhrf1 other upstream 201275 14165026 ~ 14174218 (+)
G180936 NA other upstream 879508 13495590 ~ 13495985 (+)
G180834 NA other upstream 1069777 13301255 ~ 13305716 (+)
trnag-gcc_17 NA other upstream 1099937 13275486 ~ 13275556 (+)
LOC113540185 NA other downstream 182082 14561555 ~ 14563010 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other downstream 210407 14589880 ~ 14599979 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other downstream 243070 14622543 ~ 14649685 (+)
pdzk1ip1 NA other downstream 329454 14708927 ~ 14711727 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other downstream 1289325 15668798 ~ 15673982 (+)

Expression


Co-expression Network