G181300


Basic Information

Item Value
gene id G181300
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14437375 ~ 14438009 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU214585
AGTTTAATATGTGCAATTTTAAACAGCACTACAAAGACTTTCCAAAAGGTTCACACCTTTAACCAAAAACATCACCAAAATCTGACTATTATAACATTCCGCACTTCTACAGAAcacaaattcagaaaaaaaacatcattgctctaataataataataataataataataataataataatgagactACTTATTGCATAGTTTATCACAGTATGAAACAATTACTAACATCTTCACCCACTTTGTTCCACACACTTCAAGTGCACTTTATTCTGCCCCTCTAAGCTCCCTTAATTTCAGGCACAAGAGAACAGAAGATCCTGCATAACACTCCATTTCTGTAGATGTTCataaaatctgttcattttattCCTGTTTATTAAGCTTTTGTGACACAGGTAGATCCTCGCCTTTAGTCAGAATGGCAAAGATTCTCTACATTCATGTGCAATGAAAAGACGTGACTTGGATTTCAAACTTAATGACCAGGTATTAaacaaacaggttttttttttccattaacaaGCAGGTTTTTAAGCTCAACCTTAACGCTTCGTTTGTTTAATTCACAAAATTATACGTTTCTCTTTTggagaaaacaaatatatattactTTCAATAAGCTTTTGGTGTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214585 True 635 lncRNA 0.32 1 14437375 14438009

Neighbor

gene id symbol gene type direction distance location
c11h19orf44 c10h19orf44 coding upstream 46822 14383457 ~ 14390553 (+)
cers4a cers4 coding upstream 78508 14343238 ~ 14358867 (+)
timm44 timm44,LOC108441293,LOC107660209,LOC107561596,LOC107704494 coding upstream 233643 14189261 ~ 14203732 (+)
ticam1 NA coding upstream 250044 14183219 ~ 14187331 (+)
gipc3 gipc3,LOC108270865,LOC108424935,LOC100702370,LOC102212133,LOC107559818,LOC107678090 coding upstream 924501 13496678 ~ 13512874 (+)
atcaya atcay,LOC108270591,LOC108430235,LOC103374683 coding downstream 25179 14463188 ~ 14469987 (+)
mibp mibp,LOC108271439,LOC103035840,LOC108430237,LOC107734093,LOC107702642,LOC107566367,LOC107698603 coding downstream 35333 14473342 ~ 14477751 (+)
mydgf mydgf,LOC107566370 coding downstream 43548 14481557 ~ 14487812 (+)
LOC113527219 LOC108270689,LOC108429511,LOC107653644,LOC107715111,LOC107588053,LOC103463808,LOC100711005,LOC106955782 coding downstream 162421 14600430 ~ 14611565 (+)
ier5 LOC100304758 coding downstream 232872 14670881 ~ 14672730 (+)
G181252 NA non-coding upstream 27298 14409722 ~ 14410077 (+)
G181236 calr3,LOC107702625,LOC102296215,LOC107717161,LOC107723933 non-coding upstream 57902 14375493 ~ 14379473 (+)
G181233 LOC108271251 non-coding upstream 76003 14360788 ~ 14361372 (+)
G181157 NA non-coding upstream 143994 14145873 ~ 14293381 (+)
G181136 NA non-coding upstream 336388 14097660 ~ 14100987 (+)
G181475 stx6,LOC107715114,LOC107669815,LOC107653648 non-coding downstream 226692 14664701 ~ 14665064 (+)
G181588 NA non-coding downstream 429918 14867927 ~ 14930862 (+)
G181599 NA non-coding downstream 522876 14960885 ~ 14977551 (+)
LOC113533733 NA non-coding downstream 556679 14994688 ~ 15002233 (+)
G181632 NA non-coding downstream 647892 15085901 ~ 15086320 (+)
LOC113531387 ctxn1 other upstream 196834 14222218 ~ 14240541 (+)
G181175 uhrf1 other upstream 263157 14165026 ~ 14174218 (+)
G180936 NA other upstream 941390 13495590 ~ 13495985 (+)
G180834 NA other upstream 1131659 13301255 ~ 13305716 (+)
trnag-gcc_17 NA other upstream 1161819 13275486 ~ 13275556 (+)
LOC113540185 NA other downstream 123546 14561555 ~ 14563010 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other downstream 151871 14589880 ~ 14599979 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other downstream 184534 14622543 ~ 14649685 (+)
pdzk1ip1 NA other downstream 270918 14708927 ~ 14711727 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other downstream 1230789 15668798 ~ 15673982 (+)

Expression


Co-expression Network