G181824 (hnrnpm)


Basic Information

Item Value
gene id G181824
gene name hnrnpm
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15299248 ~ 15308946 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU215210
ACTCATCAGTGGACAGCGGTGAATGCATGGGTCAGCGCCTATACAGTGACATTTAAGCTAGCCACCCCCAAAAAATGGCCAAACGAAAAGTGAAAACAGGGGGAGGCAGAGTACCTGTTTGTTGCTATTGAAGAGTGTGGTACAGGCAGCTGAGCAAATCACAGGCAGCAAACTCAGGAACTTGGAGGACATCTACCAGACACGCTGCATGAGGATGGCTCACAATATAATGGCAGATTGCACTCATCCAGCTCACAACCTGTTCATCAAGCTACCCTCTGCTTGAAGGCCATGGATGATCTCATTAGGAATGTTTGGATTGTTCATGAGACTTGGCGGGATGTTGACCATGGGGGGAGCACCAGGTCCGGGTCCCATACCCATTCCACCACCCATTCCTCCACCCATACCACCAGGAGGccctccaccaccaccctgaacCCTGTGGGCTTCACGCTGGGCAATCACTCCATCTGGATCCTGGAACCAACACCAGCAGCAACCATTAGCCAACATCAACAGAGCCTTCTTCATTAGTTCTTCGGTTCTAAACTCAACCACCGCACTTACCCTTGATTTGCCTTCCGCGTCCATTAAGTGTTCCACGTACGTTACCTCACCCActttttctttcattagGTCCTTCAGCGCCTGCCATTTGACATCATAGGGAATGTTGCTCACAAAAACCCGGTATCTCTTGGAGGGGTTGGCGTAGGGCTCGTATCTACCACCTCCTCGTTTGGACGATCTCTCCTTCCTGGACTCATGGCTGGGCTTTCCATTCACTGCATTTCCTTGGCCTGGTTTCTCTGGTGCAGCATCAGACGACATTGTCGGCGTTTCTTCTTTTCCTGACATGCAAATTAACGTCAAATACAAGTAACAACAGGAAAGCGGTGTTTAATAGCTAAATTTACTGATATATTTGTCAAGCAACGCGGTTACACTGAGCTACTCTACTCCCGGCGCTCCTGGACGAGTGAAATGGCGGCAGAGCGAC
>TU215211
GGTTCGATTGAACAGGAGCTGGCCATTGAACATGGCTAATGAATGTTAAGGAGATTTGAGACATTCAGAAAAGACAATTTCAACACagtcacaacaaaaaaaaaaatacaacaactgCTTTACAGCTCTTTTACACTTGTAAAGGATACAGACTGCTTGCACAGCTTCAATTGGCATTTCAAAGGTGACTGTTCCCATGCCCCTGCTCTTGCCATCTTTGTCCTCTAGGATGTCAGTGCGGACGACCACCCCAGCCATGCTGAACACCTCTTTCAGCTTCTTCCAGCCCACCTTATAATCaagATTTGCCACAAAAACTGTGCTTCCTATCTTGCCAGCTTGAAGGCCATGGATGATCTCATTAGGAATGTTTGGATTGTTCATGAGACTTGGCGGGATGTTGACCATGGGGGGAGCACCAGGTCCGGGTCCCATACCCATTCCACCACCCATTCCTCCACCCATACCACCAGGAGGccctccaccaccaccctgaacCCTGTGGGCTTCACGCTGGGCAATCACTCCATCTGGATCCTGGAACCAACACCAGCAGCAACCATTAGCCAACATCAACAGAGCCTTCTTCATTAGTTCTTCGGTTCTAAACTCAACCACCGCACTTACCCTTGATTTGCCTTCCGCGTCCATTAAGTGTTCCACGTACGTTACCTCACCCActttttctttcattagGTCCTTCAGCGCCTGCCATTTGACATCATAGGGAATGTTGCTCACAAAAACCCGGTATCTCTTGGAGGGGTTGGCGTAGGGCTCGTATCTACCACCTCCTCGTTTGGACGATCTCTCCTTCCTGGACTCATGGCTGGGCTTTCCATTCACTGCATTTCCTTGGCCTGGTTTCTCTGGTGCAGCATCAGACGACATTGTCGGCGTTTCTTCTTTTCCTGACATGCAAATTAACGTCAAATACAAGTAACAACAGGAAAGCGGTGTTTAATAGCTAAATTTACTGATATATTTGTCAAGCAACGCGGTTACACTGAGCTACTCTACTCCCGGCGCTCCTGGACGAGTGAAATGGCGGCAGAGCGAC

Function

symbol description
hnrnpm Predicted to enable mRNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome and regulation of mRNA stability involved in response to oxidative stress. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be part of post-mRNA release spliceosomal complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human HNRNPM (heterogeneous nuclear ribonucleoprotein M).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215210 False 1003 lncRNA 0.50 7 15299248 15308946
TU215211 True 1060 lncRNA 0.48 6 15304336 15308946

Neighbor

gene id symbol gene type direction distance location
rabgap1l rabgap1l,LOC106613570,LOC107715121,LOC105011404,LOC107728556,LOC106574055,LOC107592725,LOC107655181 coding upstream 13450 15170561 ~ 15285798 (+)
gpr52 gpr52,LOC107655251,LOC107715120,LOC107599442,LOC107592687 coding upstream 88483 15205449 ~ 15210765 (+)
fam163a fam163a coding upstream 133350 15151021 ~ 15165898 (+)
tdrd5 tdrd5 coding upstream 150876 15132007 ~ 15148372 (+)
axdnd1 axdnd1 coding upstream 173124 15115050 ~ 15126124 (+)
hapln4 hapln4 coding downstream 212312 15521258 ~ 15528248 (+)
nr2c2ap nr2c2ap coding downstream 353539 15662485 ~ 15665726 (+)
mef2b mef2b coding downstream 366746 15675692 ~ 15692110 (+)
gatad2ab LOC108271147,LOC108429549 coding downstream 467740 15776686 ~ 15800617 (+)
yjefn3 yjefn3,LOC108271278,LOC108429551,LOC103041169,LOC107687717 coding downstream 496340 15805286 ~ 15838980 (+)
G181851 NA non-coding upstream 5181 15293238 ~ 15294067 (+)
G181632 NA non-coding upstream 212928 15085901 ~ 15086320 (+)
LOC113533733 NA non-coding upstream 297015 14994688 ~ 15002233 (+)
G181599 NA non-coding upstream 321697 14960885 ~ 14977551 (+)
G181588 NA non-coding upstream 368386 14867927 ~ 14930862 (+)
G181944 NA non-coding downstream 63812 15372758 ~ 15372970 (+)
G181945 NA non-coding downstream 64274 15373220 ~ 15383177 (+)
G181946 NA non-coding downstream 67130 15376076 ~ 15377227 (+)
LOC113534769 NA non-coding downstream 82124 15391070 ~ 15402125 (+)
G182012 NA non-coding downstream 206795 15515741 ~ 15515955 (+)
pdzk1ip1 NA other upstream 587521 14708927 ~ 14711727 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other upstream 649563 14622543 ~ 14649685 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other upstream 699269 14589880 ~ 14599979 (+)
LOC113540185 NA other upstream 736238 14561555 ~ 14563010 (+)
LOC113531387 ctxn1 other upstream 1058707 14222218 ~ 14240541 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other downstream 359852 15668798 ~ 15673982 (+)
LOC113532318 NA other downstream 946101 16255047 ~ 16256782 (+)
G182819 NA other downstream 1274357 16583303 ~ 16584943 (+)
G182877 NA other downstream 1604312 16913258 ~ 16922922 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other downstream 1812953 17121899 ~ 17189315 (+)

Expression


Co-expression Network