G181946


Basic Information

Item Value
gene id G181946
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15376076 ~ 15377227 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU215367
AATATTTCTTCCTTCCCAAGGGGTTTTCCTCTAAATCACGGGTGTCAAACATACATCTAATCTATGTTTCTAGTCTAGCCCACTGACTGAATTTAGAATCAgtgtccaaaaataaaataaataaaaagtatgtgtccCCAAGACAGCGATACATAGTCATCTCTCTATGTATCAATATGGAAAATACATGcatctgcttttattattaggCCTGAATAGTGCTGACTTACTTTCCTAAGAATCCTTCGCCCTCGGGTTGCTTTTTCAACCACTTCCACAGGGCATGAGCTTCTGGTCCGTTTACATTGATCTTGCTGAATAAGTCAAATTTCACATTGTATGATTTGGCATATTGTTTGATCTGTTCATGGGTGCCAGGTTCCTGGTTGCCAAACTGGTTGCATGGGAAAGCCAGGATGGATAAACCTCTCTCAGCGTATTTGGCGTGCATCTGTGCAAACTGAGAGTAGTTTACTGGGGCTTTGGCTCATTTGGTGGCAACGTTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215367 True 508 lncRNA 0.41 2 15376076 15377227

Neighbor

gene id symbol gene type direction distance location
rabgap1l rabgap1l,LOC106613570,LOC107715121,LOC105011404,LOC107728556,LOC106574055,LOC107592725,LOC107655181 coding upstream 90278 15170561 ~ 15285798 (+)
gpr52 gpr52,LOC107655251,LOC107715120,LOC107599442,LOC107592687 coding upstream 165311 15205449 ~ 15210765 (+)
fam163a fam163a coding upstream 210178 15151021 ~ 15165898 (+)
tdrd5 tdrd5 coding upstream 227704 15132007 ~ 15148372 (+)
axdnd1 axdnd1 coding upstream 249952 15115050 ~ 15126124 (+)
hapln4 hapln4 coding downstream 144031 15521258 ~ 15528248 (+)
nr2c2ap nr2c2ap coding downstream 285258 15662485 ~ 15665726 (+)
mef2b mef2b coding downstream 298465 15675692 ~ 15692110 (+)
gatad2ab LOC108271147,LOC108429549 coding downstream 399459 15776686 ~ 15800617 (+)
yjefn3 yjefn3,LOC108271278,LOC108429551,LOC103041169,LOC107687717 coding downstream 428059 15805286 ~ 15838980 (+)
G181944 NA non-coding upstream 3106 15372758 ~ 15372970 (+)
G181824 hnrnpm non-coding upstream 67130 15299248 ~ 15308946 (+)
G181851 NA non-coding upstream 82009 15293238 ~ 15294067 (+)
G181632 NA non-coding upstream 289756 15085901 ~ 15086320 (+)
LOC113533733 NA non-coding upstream 373843 14994688 ~ 15002233 (+)
LOC113534769 NA non-coding downstream 13843 15391070 ~ 15402125 (+)
G182012 NA non-coding downstream 138514 15515741 ~ 15515955 (+)
LOC113533795 NA non-coding downstream 336206 15713433 ~ 15755867 (+)
G182131 NA non-coding downstream 367553 15744780 ~ 15745413 (+)
G182154 NA non-coding downstream 421456 15798683 ~ 15799329 (+)
pdzk1ip1 NA other upstream 664349 14708927 ~ 14711727 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other upstream 726391 14622543 ~ 14649685 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other upstream 776097 14589880 ~ 14599979 (+)
LOC113540185 NA other upstream 813066 14561555 ~ 14563010 (+)
LOC113531387 ctxn1 other upstream 1135535 14222218 ~ 14240541 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other downstream 291571 15668798 ~ 15673982 (+)
LOC113532318 NA other downstream 877820 16255047 ~ 16256782 (+)
G182819 NA other downstream 1206076 16583303 ~ 16584943 (+)
G182877 NA other downstream 1536031 16913258 ~ 16922922 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other downstream 1744672 17121899 ~ 17189315 (+)

Expression


Co-expression Network