borcs8 (borcs8,LOC107728595,LOC107554813,LOC107599453)


Basic Information

Item Value
gene id borcs8
gene name borcs8,LOC107728595,LOC107554813,LOC107599453
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15668798 ~ 15673982 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU215564
ACTACGTAATCGCACAACCCATGACAGAACCGTATGGACGTAAATAAGCTACAGTATTTCTTTTAACTGAAGAAAATTTTgcgttttgtttaaaatggacGACCAGGAAATGCAATTGAAAGTAAAGCGAGTGACGGATAAGTTCACAGAGAGCATGTACGTGTTGGCTAATGAACCGTCCATAGCGCTGTATCGCCTGCAGGAGCATGTGAGGAGGTCACTGCCTGAGCTGGTACAACACAAGACAGACATGCAGAGCTGGGAAGAACAGAGCCAAGGAGCAATTTATACTGTGGAGTATGCCTGCAGTGAAAAGCATGGCCAACAGCAGcctctattttaaaaatatcgaCGGACTGCTGAAGCAAGCCATTGCAACAAAGGAACACATCAGCGGTGCTCAAGGACGCAGGAAAAGAAATGTGGATCCTGGGATAATGAGAGACACTTGTGAGAAGCAGCATTCTGGGATATGAAGTACAGTTACGAGTCTGCTGAATGGACTCCATTACAAACGTGTACCTTACTCCATCTGAGTGTGAGGCCTCTTGAATTGAGACTTTGGCAACTCGACAGAGCCTTGCGAGGAGTGAATGCGAATGCTCTGCCAGGTTCTCCATTACAGTGCTTCATCAAGTGTGTGAAGGAAAGGATTATTCTCAGTCGTATGTAAATATATTCAAGTAGCTTTAAACTGTAGTATGCTTTTGCATTACAATGGCTTACTTTTAAACTGATCTGATATGTTGCCtaaatatcctttttttttaactgatttaatatttatttgtatgctATACATGTAATTGTAGCATTAAAATATG
>TU215565
ACTACGTAATCGCACAACCCATGACAGAACCGTATGGACGTAAATAAGCTACAGTATTTCTTTTAACTGAAGAAAATTTTgcgttttgtttaaaatggacGACCAGGAAATGCAATTGAAAGTAAAGCGAGTGACGGATAAGTTCACAGAGAGCATGTACGTGTTGGCTAATGAACCGTCCATAGCGCTGTATCGCCTGCAGGAGCATGTGAGGAGGTCACTGCCTGAGCTGGTACAACACAAGACAGACATGCAGAGCTGGGAAGAACAGAGCCAAGGAGCAATTTATACTGTGGAGTATGCCTGCAGTGAAAAGCATGGCCAACAGCAGcctctattttaaaaatatcgaCGGACTGCTGAAGCAAGCCATTGCAACAAAGGAACACATCAGCGGTGCTCAAGGACGCAGGAAAAGAAATGTGGATCCTGGGATAATGAGAGACACTTGTGAGAAGCAGCATTCTGGGATATGAAGTACAGTTACGAGTCTGCTGAATGGACTCCATTACAAACGTGTACCTTACTCCATCTGAGTGTGAGGCCTCTTGAATTGAGACTTTGGCAACTCGACAGAGCCTTGCGAGGAGTGAATGCGAATGCTCTGCCAGGTTCTCCATTACAGTGCTTCATCAAGTGTGTGAAGGAAAGGATTATTCTCAGTCAGCTTTAGCTTTAGCACTGATGGCACTTACCACCCAGGTAAAAAGAAATCCCAGTGCAAAACAAGCCGATAGCGACATGCCGAATGACCCTGCTGTCTGACAGGAACCATTCAGCCCTGAGggaggaaaaaacagaggtcAAGTGCACAGAATACGGTGCAAAGGTTTTTACTCCAGTTGCTTACgggtgaaaatgaaaattttattacCTGTATTAAacaattatacaatttaaaaaaaaatcatagaagttaaataaaacatcctgaaacaaaacagcaatCCAAAACATTAGGCAAAGTTAACAGAAGAATAAAATCAAtatgataaacattttaacatccaCTAGTTTACCATTTTATTACTTGCTAATGAAGAAACATTTGTGCGACTCAACACACTAAACATCAtggttaaaatattatttatctgTTGTCTTTGAAAGATCTATTCTCGGTAATAAATGTGCCgtctgtattttttgttgttgttgctggaGTGGTGCC
>XM_026912664.2
GTTGGAGGCCGAGCGAAATTTCCGGTGCACACTACGTAATCGCACAACCCATGACAGAACCGTATGGACGTAAATAAGCTACAGTATTTCTTTTAACTGAAGAAAATTTTgcgttttgtttaaaatggacGACCAGGAAATGCAATTGAAAGTAAAGCGAGTGACGGATAAGTTCACAGAGAGCATGTACGTGTTGGCTAATGAACCGTCCATAGCGCTGTATCGCCTGCAGGAGCATGTGAGGAGGTCACTGCCTGAGCTGGTACAACACAAGACAGACATGCAGAGCTGGGAAGAACAGAGCCAAGGAGCAATTTATACTGTGGAGTATGCCTGCAGCGCAGTGAAAAGCATGGCCAACAGCAGcctctattttaaaaatatcgaCGGACTGCTGAAGCAAGCCATTGCAACAAAGGAACACATCAGCGGTGCTCAAGGACGCAGTGGTGTGAAACCTGTACCTAATCACAGTGACCCTCCACCACATGACTCTTCCACATCATCATGACGCATGGAAATCTATAAGCAAGGAAAAGAAATGTGGATCCTGGGATAATGAGAGACACTTGTGAGAAGCAGCATTCTGGGATATGAAGTACAGTTACGAGTCTGCTGAATGGACTCCATTACAAACGTGTACCTTACTCCATCTGAGTGTGAGGCCTCTTGAATTGAGACTTTGGCAACTCGACAGAGCCTTGCGAGGAGTGAATGCGAATGCTCTGCCAGGTTCTCCATTACAGTGCTTCATCAAGTGTGTGAAGGAAAGGATTATTCTCAGTCGTATGTAAATATATTCAAGTAGCTTTAAACTGTAGTATGCTTTTGCATTACAATGGCTTACTTTTAAACTGATCTGATATGTTGCCtaaatatcctttttttttaactgatttaatatttatttgtatgctATACATGTAATTGTAGCATTAAAATATGACCAAATTGATTGTTTTCA
>XM_026912680.2
GTTGGAGGCCGAGCGAAATTTCCGGTGCACACTACGTAATCGCACAACCCATGACAGAACCGTATGGACGTAAATAAGCTACAGTATTTCTTTTAACTGAAGAAAATTTTgcgttttgtttaaaatggacGACCAGGAAATGCAATTGAAAGTAAAGCGAGTGACGGATAAGTTCACAGAGAGCATGTACGTGTTGGCTAATGAACCGTCCATAGCGCTGTATCGCCTGCAGGAGCATGTGAGGAGGTCACTGCCTGAGCTGGTACAACACAAGACAGACATGCAGAGCTGGGAAGAACAGAGCCAAGGAGCAATTTATACTGTGGAGTATGCCTGCAGCGCAGTGAAAAGCATGGCCAACAGCAGcctctattttaaaaatatcgaCGGACTGCTGAAGCAAGCCATTGCAACAAAGGAACACATCAGCGGTGCTCAAGGACGCAGGAAAAGAAATGTGGATCCTGGGATAATGAGAGACACTTGTGAGAAGCAGCATTCTGGGATATGAAGTACAGTTACGAGTCTGCTGAATGGACTCCATTACAAACGTGTACCTTACTCCATCTGAGTGTGAGGCCTCTTGAATTGAGACTTTGGCAACTCGACAGAGCCTTGCGAGGAGTGAATGCGAATGCTCTGCCAGGTTCTCCATTACAGTGCTTCATCAAGTGTGTGAAGGAAAGGATTATTCTCAGTCGTATGTAAATATATTCAAGTAGCTTTAAACTGTAGTATGCTTTTGCATTACAATGGCTTACTTTTAAACTGATCTGATATGTTGCCtaaatatcctttttttttaactgatttaatatttatttgtatgctATACATGTAATTGTAGCATTAAAATATGACCAAATTGATTGTTTTCA
>XM_026912688.2
GTTGGAGGCCGAGCGAAATTTCCGGTGCACACTACGTAATCGCACAACCCATGACAGAACCGTATGGACGTAAATAAGCTACAGTATTTCTTTTAACTGAAGAAAATTTTgcgttttgtttaaaatggacGACCAGGAAATGCAATTGAAAGTAAAGCGAGTGACGGATAAGTTCACAGAGAGCATGTACGTGTTGGCTAATGAACCGTCCATAGCGCTGTATCGCCTGCAGGAGCATGTGAGGAGGTCACTGCCTGAGCTGGTACAACACAAGACAGACATGCAGAGCTGGGAAGAACAGAGCCAAGGAGCAATTTATACTGTGGAGTATGCCTGCAGCGCAGTGAAAAGCATGGCCAACAGCAGcctctattttaaaaatatcgaCGGACTGCTGAAGCAAGCCATTGCAACAAAGGAACACATCAGCGGTGCTCAAGGACGCAGGTAG

Function

symbol description
borcs8 Predicted to be located in lysosomal membrane. Predicted to be part of BORC complex. Is expressed in brain and pharyngeal arch. Orthologous to human BORCS8 (BLOC-1 related complex subunit 8).

NR:

description
PREDICTED: protein MEF2BNB isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215564 False 824 lncRNA 0.42 5 15668828 15673426
TU215565 True 1171 lncRNA 0.41 6 15668828 15673982
XM_026912664.2 False 964 mRNA 0.42 6 15668798 15673445
XM_026912680.2 False 878 mRNA 0.42 5 15668798 15673445
XM_026912688.2 False 451 mRNA 0.47 4 15668798 15670207

Neighbor

gene id symbol gene type direction distance location
nr2c2ap nr2c2ap coding upstream 3072 15662485 ~ 15665726 (+)
hapln4 hapln4 coding upstream 140550 15521258 ~ 15528248 (+)
rabgap1l rabgap1l,LOC106613570,LOC107715121,LOC105011404,LOC107728556,LOC106574055,LOC107592725,LOC107655181 coding upstream 383000 15170561 ~ 15285798 (+)
gpr52 gpr52,LOC107655251,LOC107715120,LOC107599442,LOC107592687 coding upstream 458033 15205449 ~ 15210765 (+)
fam163a fam163a coding upstream 502900 15151021 ~ 15165898 (+)
mef2b mef2b coding downstream 1710 15675692 ~ 15692110 (+)
gatad2ab LOC108271147,LOC108429549 coding downstream 102704 15776686 ~ 15800617 (+)
yjefn3 yjefn3,LOC108271278,LOC108429551,LOC103041169,LOC107687717 coding downstream 131304 15805286 ~ 15838980 (+)
cilp2 cilp2,LOC107728576,LOC107719612,LOC107599460,LOC107655229,LOC107687716 coding downstream 167015 15840997 ~ 15855719 (+)
cbarpb cbarp coding downstream 338486 16012468 ~ 16030851 (+)
G182012 NA non-coding upstream 152843 15515741 ~ 15515955 (+)
LOC113534769 NA non-coding upstream 266673 15391070 ~ 15402125 (+)
G181945 NA non-coding upstream 285621 15373220 ~ 15383177 (+)
G181946 NA non-coding upstream 291571 15376076 ~ 15377227 (+)
G181944 NA non-coding upstream 295828 15372758 ~ 15372970 (+)
LOC113533795 NA non-coding downstream 39451 15713433 ~ 15755867 (+)
G182131 NA non-coding downstream 70798 15744780 ~ 15745413 (+)
G182154 NA non-coding downstream 124701 15798683 ~ 15799329 (+)
G182155 NA non-coding downstream 130565 15804547 ~ 15804748 (+)
G182152 cirbp,LOC108271114 non-coding downstream 199028 15873010 ~ 15885825 (+)
pdzk1ip1 NA other upstream 957071 14708927 ~ 14711727 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other upstream 1019113 14622543 ~ 14649685 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other upstream 1068819 14589880 ~ 14599979 (+)
LOC113540185 NA other upstream 1105788 14561555 ~ 14563010 (+)
LOC113531387 ctxn1 other upstream 1428257 14222218 ~ 14240541 (+)
LOC113532318 NA other downstream 581065 16255047 ~ 16256782 (+)
G182819 NA other downstream 909321 16583303 ~ 16584943 (+)
G182877 NA other downstream 1239276 16913258 ~ 16922922 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other downstream 1447917 17121899 ~ 17189315 (+)
LOC113528769 klc4 other downstream 1522298 17196280 ~ 17222532 (+)

Expression


Co-expression Network