G182483


Basic Information

Item Value
gene id G182483
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16260058 ~ 16260316 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU215985
TCTCCTTcaatgctatttgaaatactaccaatttagtgtgacgccatttacgttctagttttcgagtggtctgttttaaagttcgtgtgtgatcgctataccagggtgctagctttttctccctaattatttttcttttaagtggagctaccttatctagcgagttgcagaacgttgattctaagcattcagttgcctggtcaagttcttcgggatcagacggtgatccaatcatggttgataaatctgggagattact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215985 True 259 lncRNA 0.40 1 16260058 16260316

Neighbor

gene id symbol gene type direction distance location
LOC113538695 NA coding upstream 10867 16247727 ~ 16249191 (+)
LOC113538485 LOC100304649 coding upstream 26221 16211346 ~ 16233837 (+)
fgf22 fgf22,LOC106613753,LOC107569930,LOC107655219,LOC107719646,LOC107687712 coding upstream 52238 16179542 ~ 16207820 (+)
hcn2b hcn2,hcn2b,LOC108429559 coding upstream 137949 16087204 ~ 16122109 (+)
bsg NA coding upstream 174925 16074562 ~ 16085133 (+)
LOC113533225 NA coding downstream 12652 16272968 ~ 16275203 (+)
hsd11b1la hsd11b1l coding downstream 19663 16279979 ~ 16285280 (+)
rgmd LOC108271392,LOC107576053 coding downstream 61840 16322156 ~ 16328589 (+)
LOC113544157 LOC108271000,LOC108435918,LOC107096963,LOC108239462,LOC107724979,LOC102796634,LOC107552698,LOC105011544 coding downstream 317218 16577534 ~ 16582783 (+)
LOC113537281 NA coding downstream 319920 16580236 ~ 16580303 (+)
G182190 NA non-coding upstream 250823 16006054 ~ 16009235 (+)
G182116 NA non-coding upstream 269648 15988630 ~ 15990410 (+)
G182115 NA non-coding upstream 272077 15938100 ~ 15987981 (+)
G182167 NA non-coding upstream 366531 15893292 ~ 15893527 (+)
G182152 cirbp,LOC108271114 non-coding upstream 374233 15873010 ~ 15885825 (+)
LOC117598408 zbtb7a,LOC108270628 non-coding downstream 448309 16708625 ~ 16725527 (+)
LOC117598387 NA non-coding downstream 592092 16852408 ~ 16857137 (+)
G182906 NA non-coding downstream 700343 16960659 ~ 16961299 (+)
G182910 NA non-coding downstream 729003 16989319 ~ 16989519 (+)
G182932 NA non-coding downstream 819321 17079637 ~ 17083529 (+)
LOC113532318 NA other upstream 3276 16255047 ~ 16256782 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other upstream 586076 15668798 ~ 15673982 (+)
pdzk1ip1 NA other upstream 1548331 14708927 ~ 14711727 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other upstream 1610373 14622543 ~ 14649685 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other upstream 1660079 14589880 ~ 14599979 (+)
G182819 NA other downstream 322987 16583303 ~ 16584943 (+)
G182877 NA other downstream 652942 16913258 ~ 16922922 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other downstream 861583 17121899 ~ 17189315 (+)
LOC113528769 klc4 other downstream 935964 17196280 ~ 17222532 (+)
kcnh1b kcnh1b,LOC108270513,LOC108411957,LOC107689936,LOC107753489,LOC107570545,LOC105026838,LOC103369331,LOC106564801 other downstream 1105382 17365698 ~ 17411425 (+)

Expression


Co-expression Network