LOC117598408 (zbtb7a,LOC108270628)


Basic Information

Item Value
gene id LOC117598408
gene name zbtb7a,LOC108270628
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16708625 ~ 16725527 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU216395
ACCAGGACACCAGACATTTTTGGatatatttcataaaaataaacaaacaaaacaaaaattaaacccaacagaataaaatggaaccaaaaactggaaaaaatggAATTACATGATTTAGACGATGCACATTTAGTGGTCTCATATACATTACAAATTCTTTTCATCGGCAAAAGTGCAAATTCTCCCAAACTCGCCCATCCCTCCGTAGCTTCAACAGACACTGACAATTTAAAGGAATAGGACTTAATTTAAGCTGAAAAAGGACAGGATCGCTACCGTCCAAGCCTGAGATACTGGGAAATATTCTGCCGCCCCAAAGTTTGCCTAAGTGATCTGTTAGAATGTGCCCTAATGCTCATATCAGGGTTTAAATCAAGATGCTATTGCTGAATTATTGGTTCtatatgttgtttttcttgcctgtatgcattttatataattatatacattatataatctCTGTAAGGatttgacaaaaatattgtatatatttctaAGGATATTTTATTTGTCCCTCTAACCACTGAAATTTGTTTTAACAATTGATTGAAATCTACTATAGTGTGCTTGTACAAACTAGCATTAGAGTAGGAAAATAAAGAGAGGTCGTATGTGGCCTCATATGTGCATGGAAGATTGACACTGTGAAAGATGAGTATGTGCAACTAGACCCTGGATGGGTTTGAGGGGACCAAGGCCACCACAGTACCATTCTAAACTGCAGCAGTTTAAGCTGTAAATGTGAATTCTGGAAAgtcatttaaacatatttatagtcTCATCTTTCCAACCAAAAATGTTGTAGAAAGCACGTCCTGTTTGATGTACTGCTGCTGTTGTTCCTTGCTTTGTTGTCTGTCTAAAAATGCATGTTGTTTAGTGGGGCGGCAGTTCAAAAGGACTTCAACCCAAATATTAGCACGTTCAAGTTTTTCTTTCCATGtagttttttttgcatttaaataaatcatcataTCCACAatgagatataaaaaaaaactaaacacattaacaaaagagaagaaaacagcaacaataacattAACAGTAAAAACCAATGGAGAAAGCACataaaagtgcttttttttttgttacaatcACCAACCTGCAAACAGCATGATGGCTTTGAGCCCACCTTGCTGCCTACCTACTAACCTCAGTACTGAAGTAAGGCAGAGGGAAAGAAACACATCACTTCTCTTCCCTCAAACCTAACCATGTTTACTCTCCTGCCATCATTTGTAAGTGCGAATTTTGTAGTTACGGAATGCATCCTGGATTTGTTGGTGGCttcaaaaaaaccaacaaaaagtCTCTCTCAGACACAAACTACTCTCTCTACTGTGGATATTTTGTGGCCCAGAGACTGGAATGTAGCCAGCTCAAACTGTAAACTCAGGGAAAGATGTTAACCCTGCAGTTTGATGTTTTTGTCTACTAATCTAACTCTTTGATTCTCTTTTACTTGAGAACCTTAGAATGCACACAATAGGCAGAGTAATGAGGGGGACTGTGGGTGCATAGGTCTGTTTGGTACATAAAATCTTAACATGGACAGGAATTGTACAATAAAGCTTTGATTAGATGCAAGGCAAAAACTATGGGGTGGTACCAAACCAATGGTCTGCAGTGTTTTTGAACCTGAGAAGCAGTTGACTTAAAAAATAGATGATTACCCATAATCTCCACAACAGTGACTTGTGTTCtaacacacaatgacacacacacaagcacaccaTGCACTGTTGTTCAGCATCATTTCAATGACTGGTAAAACACAACATCTGAAGCTGTCACACGCTTAGGGAGGCATCATTCATTCCTGAACATAACAACGCAACAACTACCTGTGTTTGTACAAAAACGCTACTCGCCCTCCCCATTCTGTGCAAACGACTGGTTCCCACACCCACAAAGGACTCCTAGTGCAAAGCGCCTGTAAGCAACAGACAGCAGTCTCTCCATGGATGTTCAGAACTACAACACAAATCTCTCTGTAGCTTGCATATACCTAGTCAAAAATCAACCCTTGGCATGCTGATTTATAGCTCAGATGTGACCATTTTCAACCATAACTACATTTCATTCCATGATTGTTACAGTAATCACTGTCATTGCGTGTGTATTTAATGCTTGTCCAGAacccaacaaataaataaaacaaagacaaattAATATTTGGATATTacaagtgacattttttttaaagagagacaCCATCTCAGTGTAGCATCTATCTAAGGAGTCAAAAAAGGGAGCTGAGACATCAACCTTCTATGAAGAGGAGTGAAGACCAGAGCTTTTCACTAGGACTGGgcgaaatgacaaaaatatatcacaatacttaaagacatttttacatatACATTGTGATATTTAGGCTTGGTAACAAagtgccagcaaaacagtaatgCCGCTTTTAAAAATCTATGTAAAAACATGGCTTCAAATAATGGGTTTATTTAATATCTAGACAAATAATTGACTTGAATCTAACTAAgaaaaaacaggacaaaaacaattTAACAACCAGTCAGCTAGTTGATACTGTGTGTAACAATGGAATCGGTCAGTGTTATAAAAAGTACTGACAATTCCTGGGATATCTCATAAAAGCGTATGTACTTGCAtatgatgtaatttatcacaatattcgtgttatattgtcatattgcccaacCCTACTTTTCACAAAACCTGCCCTAGCATTGCCTCATATGAACAGCTTCATGCGTTCTGATGTGGTTGTTTACGGGAATGAACAAGAATGGTCCTGATATCTTCCCATTTTAAGGCACATTCTTACCCAGTTCCCTCTCCGCTTAGTCAGGTTTATACACAGCCTCCCCCAGACTCCTTGTGGACCCATTTATACAATGTTTAAGCCCCAGACAAGGCCAGTGAGCTGCTATGAACCTACAGATGTGAAATCAGGTATTTAGCGTTTTATCCAGTTAACAGTTTGTGTTAAGTTAGACAAGTTCCTAAATGCTCTACCATCATATGTTTGGATCTGTGGTTTCGCTGACATGTAGTATGtgctttggatttttttttttaaccgcaCAACTTTTTAGTTAGTTATGTTGCTCAATAATGTAGGCATTATTTGGAAATTTTTATCTGATGCAATAATTAGATTAAGTAAGGAAGAGACAGCAAGCTTATTCAGATATAAGTTAAAAATTTTCAAGTAATCCAGGCCTTACCTACTTTGGatttataatgattaataataataataataataataataataataataagggagGTAAAAAAAAGATGGGGAGATGAAGCAGGCTTAAATTAGGCTCTGCGTTCATGGAAACTCAAAGGCCTTGCCCAGTTAATCAGTCCTTCTTATTTAAGGACTTTTAGTGCAAAAAATTCTTGCTGTTTCAGCTAAAGCACCATATCCAGTGCTATCAGGCTACATATCACCCCCAGCTCTGCCACCAAAAACAATCATCCATCTCCACAATATAAGTTCAAACCCCATCCCTCCCCTACACACACGTCAAATCATACAAGAGCTATTAACTTAAAAGTAAGTATAGCAACAACCCTTGCCAGGGTAAAAAGAAGAGACTCATTTCATCTAGTAAACAGGCAGCAACAGATCACAAAAAGGACAgtaataatgaaagaaagaactcAAGTACATTTCCTTTTCTCAATGATTTCTACTCAACTTGCTTAAGTAATAAGGGGGCTTGGTTTTGGGCTGTGGCTAATTTGTATCACACGCAACTTCACTCTGCTCTATGGACTGACCAGCTGCAAGTTGAGTCACAGAATGTTTTAGTGTAGGGTTTAGGTTCATGGACAGCCAGAAGCCGTGCTCCCAATAATCAACCCAAAgtgcgtttaaaaaaaaaaaaaaaaaaaaaaacttggaatTTCTGGACAGACTAGTCACATAACATGGGTTGGGACAAACTAAGCTCACTATGCAGTGAGCATTGCTTAGGGTGTGGCCTTGCAATAGCAACCTTAACCAAACATATCCCTTTTATTACAAACCCTACACAGGTTGTCACTGAGTGAAAATTGGAGTTAGACTATAACAGGCAGTCTGTTCTCTGCACATAATGATACAAACCAGAGTAATGAACTGGTCAACTGTCTAAATGGAATATACATCTTAAGAATTACTGGAAGACCCCTGCAGACACGCAGGCACCCAAACACgcattctcacacacacgcattctcacacacacaagcatgtaGCCACCCCCTCAATGACCCCATTCTGCATTAAgacatatataaagaaaaaaattatacatcaAATGAAAACTTCAAGTGCAATCAGATATAAGGGCAATATCTTCTTTTTAAGGGTGTCTTTTTAAAAGTCTGCTTGTTGTCTAATCAAGGTCACACACCATTTTGGAAACTCAACATGATAACCCTGCAACATGTGACTGTACAGATTGTATTTTGGCAGCCAGTCgtcaaaaaaaccacaacaaagaACCCAGCTAAGCATCATGACATggatgggtgtttttttttttagcacattcTCTCTTTTGTTTCAAAGTACCCGTTTATTTTGACAAAAAAGTGCCCTTCTCAGTAACAAAGTGCAATCAAAACCTGCTGCTCCCGTTAAGGTGCAAAGGACTGAAACGTTGGGCACAGCACTGCAGCAATGGCAAAGTGGGTGATATCTGCCTCGCAAATGGTATTAAAAACTTTATTCTCTAGTCACTACCACCAGCAATTACACCAAGATTTTTCTCTGTATTCTCCAAATGAGGCAACTCTATGTGAGGTCTGTAAAGTCCATCAAGCACTTTTGGAATAATAAGATTTAGCTATGAtagcccctctctctctctaataaaaATGGAGGCGACCATAACTGCAGTCACAATGCCAGATTTTGGAGAGAAGCATGTTTGGACGTGCCCACAAACCTGACATGCTGACGCTCCCAGCCCCGGGGATTGAGTCACGTGGCTTAGGATGTGTCCAAAGGACATTGTTGCACCCTCCCAGAGATCAACACTCACAAAATAATGGAACATTGACCCCCCTTCTTCCCCAATTTGGCATCCCAACCCAAACAAGTATTTATTGCTCATCTCATCACCCTGGTCGTCCCATGGATTTGTGGTCCCTTGGGCAGAATGTTGGAACAAGTACTTCTAacttcccttctctctcttaaatataaatctctctctttctttctccattggGATTAAATCTTTAGTAAAGTTGTGCAAATGCATAAAAGGTGCTcatctctctttccttccttcccatgcatgaaaagagaaaacattCTCAGCCTTTGTGCACCAGCTGTCTGTAAAACAGcgccctctctctcactgagctgGCAAACCTTGGCAGATTCActcaacatctctctctctctcacacacacacacacacacagatcacggTTCATGCTTTGGGATGGAACTTGCCGGTTCCGTCAAGTGCTGAGTTTAGGACAAAATGGGTTCCTCAATTGAATGTTCTCATACATTCAAACAGCCTTTCACCCTTTGTAAGCTTCAATCAGGGAGGAGCCTGGAGTGAAGCTGATGGAAGATATAACCCTAACAATCTGTAATAAACCTTTTATAAAGGGACCAATATCATTATCAcctaatatatacacacatgtatacaatGTAAAGTGTCAAGTACCCAAAACAGCcaattcaaatgaaaacatcaacaatgacaaaaataagacaagaaaaaaataacccaAGAATTCtaaaaggaggaaaaacagGCTTGTGAGAGGTAAAAGATTCAACATGGTTTTGCTCAGTGGCAAAGTGATGACGGTAGTGCTTCCGAAACACAGAACCTCATCCCATCTCTTCCTCCCATGGCCTAATGTGATTTGACTCaaattttaaccttttaaaaagatataaccatgtattatttttatagagAAAGTAACACTTAAAATCAAACCCCTGTCTGATTCTTTCTGGAACATTTATAAAGAAGGTGCTGCATAAGAATTGCATAATATTGCCATATTGAACTGAGACAATAGAATCTTTTCTTTATggtatatgtacatatttttcactgcattagaaaaaaaaaaagattcatttgtTGCTTCTCCCACATCTTGGATCATTCTTTGTTTACCTGTTGCATTAGCAGCCGTGGTCAGCCAGGTGTTTGACACCTCACTTGTTTAAGACAAAGCCCTGTGGACACAACCCAGAGATGAGGAACCTGTTTTAACTGCATAGTAACTCCATTGTCTCGTATGCTTATGGACAAGCGATTACGCCAAAGTTAATTTAAGAacacaaaatcaaaaataaacacccagaaagacagagacagcacAGGTGAGTGATGTCAAGTGCTCTTCACTCTTTCAACAGGCCAGTAACTGTGGCTTCAGGTCTCTATGCTGAatgttaaagggaaaaaaaaaacagaaagaaagatgtaaATTAAGAGATTAGATTTTTGGGACACCCTGATTTGGTTTTTAAAGAGAAGCATGGagttgtagcttttttttttctcttaattgattttcttttttctctgatttCTGTGCAACACCAGCACCAGCAGTGTGTAATTTATGGCGTTGTGGCGTCTCTTTGCCTTGCAGTTGCATCTCCTCTAGCCTCTCTGTCAGCAAGTGGGCTGTGTGTGCGGCTCTTTGGAACTTCTTCCATAACGACCACACCGAtgccctcctcctcctcatcctcctcatcctctggATGCAGCTGGCCCCTGGTGGATCTCGGTCCTGCGCTGGTCGGCTCCAGAGGGGCTTCAAGCACATCTGGTTCTCGTACGCGAGGCTTGCGCCCACGGCGAGATGGGATGCCATTGCAGCCATCCTTCTTCAAGTGGCGGTGGAGATGGTCCGAGCGAACAAAGGTCTTAAAGCAGCTGGAGCACTGATAGGGGCGTAAGCCTGTGTGTACACGCATGTGATTCTTCAGGTCATAGTTGTGAGCAAAGGCGGCACCACACTGTGTGCACAGGTAAGGCTTCTCTCCTGTATGCTTGCGCATGTGAACCTTGAGCTTGTCCTGTCTGGAAACATGCCTGGTGAAGCGCACTTTGCAGATGGCACACTCGTAGGGCTTCTCTCCAGTGTGCGTGCGGATGTGGCGGGGTAGCTTGCCAGCACCCTGGATGACCTTGGAGCAAATAGGGCACTTCTGGAAGGCCTTGGAGCGCATTTTTCTCTCACCACCGGCATTCCCTGTGCTAGGTTGGCCTCCAGTGCCTCTACCTTCTCCACCTCGCACCGAGGTCCAGAGTGGAACGGTTGCCTCCTCACGTTGCACACTGTTAAAGTACTTCAAGTAAAACTCCACGTCAGGCTCATCTCCGTCAGCGCCCTCATTTTCAGCCCCAGCTGGCCTCTCCTTCTTACGCTCTATAGAGTCCATCATCTGCTGCAGGAGAGCGCTGGCGGGCCCTCGCTCCACCTCGCGCTCCGCCTCTGCTTCCCGCTCTGCCTTGGGCTCGGATTGATGGAGGTAGAAGTGTCCATTCTGTGATGATGGGGCATAGATGTGCGAGAGCGCTTCAGTGCCATTCCCTCGAGTCCAGATCAGCACGTCCTTGGTGTCCTGCTGCTCATCTGGGTCATCCTCCGGGTCTGGTGGAGGGTGCATCGCCAGCCCTGGGCCTGGGGGGGGGAAGTAGTTAGACGGCGTGCCATTGCTGTCAGCGCCGTTGCGATGGCTAAAGTGCAGGTGTGCGGGCATGTCCCTGAGCTCTGGCGTACTGCAGCTGCTTCTCCAGTGCGCCCCTCGCTGGAAGAATTCCAGGTACTCGCGAGCGCGTAGCCAGTTGCCCTGCTCTCGGCTGCTCCGCCCGCACTCTCCATCCTCTTCCAGCTCGTCCTCTCTTCGCTCGTTGCCCGTCTGAGAACAGAAAGCC
>XR_004579080.1
TACTGGAACATGCGGACACTTTCGAGGGGAAATGTCACTTTAACGCCACATTTTGTTGGGATAGCGATAAACATTTAGACAGAACATTAAATAGTAAtggatatattattattattattattattattattattattattattatttaaggaaTTTAATCCCCCCTCGTAGTTCCCAGTACAAACCCCACTTTCTAGTGCTGTTTGCTAAGTTTGCCGTTTTgttagcaaaacaaaaaaaaattagcaaagaGGACCAGAAACGTTTCAGAGAAATGCTGTAGCACTTTATCACCCCCATCTGTTGCATCTCCTCTAGCCTCTCTGTCAGCAAGTGGGCTGTGTGTGCGGCTCTTTGGAACTTCTTCCATAACGACCACACCGAtgccctcctcctcctcatcctcctcatcctctggATGCAGCTGGCCCCTGGTGGATCTCGGTCCTGCGCTGGTCGGCTCCAGAGGGGCTTCAAGCACATCTGGTTCTCGTACGCGAGGCTTGCGCCCACGGCGAGATGGGATGCCATTGCAGCCATCCTTCTTCAAGTGGCGGTGGAGATGGTCCGAGCGAACAAAGGTCTTAAAGCAGCTGGAGCACTGATAGGGGCGTAAGCCTGTGTGTACACGCATGTGATTCTTCAGGTCATAGTTGTGAGCAAAGGCGGCACCACACTGTGTGCACAG

Function

symbol description
zbtb7a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB7A (zinc finger and BTB domain containing 7A).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216395 True 7920 lncRNA 0.42 3 16713713 16725527
XR_004579080.1 False 688 lncRNA 0.47 2 16708625 16720748

Neighbor

gene id symbol gene type direction distance location
unc13a LOC108270949,LOC108430111 coding upstream 58510 16606126 ~ 16650115 (+)
hmg20b hmg20b,LOC107586380,LOC107719660,LOC107655186,LOC107729671 coding upstream 105863 16597960 ~ 16602762 (+)
LOC113544157 LOC108271000,LOC108435918,LOC107096963,LOC108239462,LOC107724979,LOC102796634,LOC107552698,LOC105011544 coding upstream 125842 16577534 ~ 16582783 (+)
LOC113537281 NA coding upstream 128322 16580236 ~ 16580303 (+)
rgmd LOC108271392,LOC107576053 coding upstream 380036 16322156 ~ 16328589 (+)
chaf1a chaf1a coding downstream 48931 16774458 ~ 16786199 (+)
hdgfl2 hdgfrp2,LOC108270897,LOC108430101,LOC107676974,LOC107717991 coding downstream 76277 16801804 ~ 16814246 (+)
ap3d1 ap3d1,LOC107593327,LOC107676965,LOC107586409 coding downstream 89081 16814608 ~ 16847204 (+)
LOC113532286 LOC108270593,LOC108430073,LOC107719667,LOC100332608,LOC107699403,LOC107593325,LOC107676991,LOC107586464 coding downstream 133400 16858927 ~ 16862149 (+)
LOC113527868 LOC108271202,LOC108430096,LOC105011594,LOC107717982,LOC107699416,LOC106584406,LOC106613802,LOC107586405 coding downstream 187045 16912572 ~ 16947458 (+)
G182483 NA non-coding upstream 448309 16260058 ~ 16260316 (+)
G182190 NA non-coding upstream 699390 16006054 ~ 16009235 (+)
G182116 NA non-coding upstream 718215 15988630 ~ 15990410 (+)
G182115 NA non-coding upstream 720644 15938100 ~ 15987981 (+)
G182167 NA non-coding upstream 815098 15893292 ~ 15893527 (+)
LOC117598387 NA non-coding downstream 126881 16852408 ~ 16857137 (+)
G182906 NA non-coding downstream 235132 16960659 ~ 16961299 (+)
G182910 NA non-coding downstream 263792 16989319 ~ 16989519 (+)
G182932 NA non-coding downstream 354110 17079637 ~ 17083529 (+)
LOC113535983 NA non-coding downstream 691203 17416730 ~ 17423320 (+)
G182819 NA other upstream 123682 16583303 ~ 16584943 (+)
LOC113532318 NA other upstream 451843 16255047 ~ 16256782 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other upstream 1034643 15668798 ~ 15673982 (+)
pdzk1ip1 NA other upstream 1996898 14708927 ~ 14711727 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other upstream 2058940 14622543 ~ 14649685 (+)
G182877 NA other downstream 187731 16913258 ~ 16922922 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other downstream 396372 17121899 ~ 17189315 (+)
LOC113528769 klc4 other downstream 470753 17196280 ~ 17222532 (+)
kcnh1b kcnh1b,LOC108270513,LOC108411957,LOC107689936,LOC107753489,LOC107570545,LOC105026838,LOC103369331,LOC106564801 other downstream 640171 17365698 ~ 17411425 (+)
LOC113536271 ankub1 other downstream 714269 17439796 ~ 17446248 (+)

Expression


Co-expression Network