G182910


Basic Information

Item Value
gene id G182910
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16989319 ~ 16989519 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU216493
ATTCAGAGCAAGGAAGGAAAGACAtgtttacactgtgtgtatgtgtgtgtgttcagggaaGGGTTAATGCTGTCAGGAACGGGCAGCGATTCCAGATGGAAGACTTTTAGCCGCTGAACTTAATTGGCACGACATGGACCAGGCACCGTGCCAACCGACCAGACCCCTCCGCAGCTGAGAacaacacagacagagacagag

Function

GO:

id name namespace
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function
GO:0008227 G protein-coupled amine receptor activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU216493 True 201 lncRNA 0.51 1 16989319 16989519

Neighbor

gene id symbol gene type direction distance location
tle5 aes,LOC108271216,LOC108430095,LOC107593322,LOC107586404 coding upstream 13742 16949748 ~ 16975577 (+)
LOC113527868 LOC108271202,LOC108430096,LOC105011594,LOC107717982,LOC107699416,LOC106584406,LOC106613802,LOC107586405 coding upstream 41861 16912572 ~ 16947458 (+)
LOC113532286 LOC108270593,LOC108430073,LOC107719667,LOC100332608,LOC107699403,LOC107593325,LOC107676991,LOC107586464 coding upstream 127170 16858927 ~ 16862149 (+)
ap3d1 ap3d1,LOC107593327,LOC107676965,LOC107586409 coding upstream 142115 16814608 ~ 16847204 (+)
hdgfl2 hdgfrp2,LOC108270897,LOC108430101,LOC107676974,LOC107717991 coding upstream 175073 16801804 ~ 16814246 (+)
tle2b LOC108271164,LOC108430094,LOC107676970,LOC107719559 coding downstream 10586 17000105 ~ 17066956 (+)
trnak-cuu_26 NA coding downstream 40353 17029872 ~ 17029944 (+)
soul4 LOC108270966,LOC108411954 coding downstream 234907 17224426 ~ 17235688 (+)
ptk7a ptk7,LOC108411955,LOC107702250,LOC107588446,LOC107732247 coding downstream 250973 17240492 ~ 17277455 (+)
mark1 mark1,LOC108271264,LOC108411950 coding downstream 291730 17281249 ~ 17331250 (+)
G182906 NA non-coding upstream 28020 16960659 ~ 16961299 (+)
LOC117598387 NA non-coding upstream 132182 16852408 ~ 16857137 (+)
LOC117598408 zbtb7a,LOC108270628 non-coding upstream 263792 16708625 ~ 16725527 (+)
G182483 NA non-coding upstream 729003 16260058 ~ 16260316 (+)
G182190 NA non-coding upstream 980084 16006054 ~ 16009235 (+)
G182932 NA non-coding downstream 90118 17079637 ~ 17083529 (+)
LOC113535983 NA non-coding downstream 427211 17416730 ~ 17423320 (+)
G183032 NA non-coding downstream 460938 17450457 ~ 17450736 (+)
G183058 LOC108270510 non-coding downstream 588123 17577642 ~ 17583785 (+)
G183478 NA non-coding downstream 735244 17724763 ~ 17725260 (+)
G182877 NA other upstream 66397 16913258 ~ 16922922 (+)
G182819 NA other upstream 404376 16583303 ~ 16584943 (+)
LOC113532318 NA other upstream 732537 16255047 ~ 16256782 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other upstream 1315337 15668798 ~ 15673982 (+)
pdzk1ip1 NA other upstream 2277592 14708927 ~ 14711727 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other downstream 132380 17121899 ~ 17189315 (+)
LOC113528769 klc4 other downstream 206761 17196280 ~ 17222532 (+)
kcnh1b kcnh1b,LOC108270513,LOC108411957,LOC107689936,LOC107753489,LOC107570545,LOC105026838,LOC103369331,LOC106564801 other downstream 376179 17365698 ~ 17411425 (+)
LOC113536271 ankub1 other downstream 450277 17439796 ~ 17446248 (+)
anos1b LOC108271321,LOC108439428 other downstream 608945 17598464 ~ 17636395 (+)

Expression


Co-expression Network