LOC113535983


Basic Information

Item Value
gene id LOC113535983
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17416730 ~ 17423320 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU216612
AGTGAGAGAGTAAAAAACTCCACTAGGATCATACATGTGCTTTAGCAGGAACGCAGGGGGCATAACCTAACAAATGTGTGGAGTCAATTGGTTTCCCAAGGGGGCGCTACTGAGGAGCTGGCTGACCAAGTCTCGACCAAGACTGCTGCTGCTCATCGCCGGCTTGAAGAGGCCTCAAGTCACCCTCATGAGAAGGAAAAGGATGAAGCGCACAAAAGTAGCAAAGGCCACGTAAGCGaaCCAGCAATCGCTTGCCACATTTCAACTGAATCCTTAAGATCAGGCCTGCCTACTGTAGAAATGGAAGAAGCTCAAGACACAGAGGAACTCATTTACCAATCTGTGTCATCTCGACGAACTAAAATCCACAGCAAACCAAAGCGAGGATGGAAAGCAAGGGTTTCACAAAGGTCCAGAGCTCCTGGCTAAAACTTGGACCCATTTTTACCCTATATCCGGCCATCTGTAGATCCCTCCTCTTTAAAAATACACGTTATGGTTAATTATGCTATGCTGGGTGTGACTGTATATTCTTTTACATTGTAGTGACAAATACTTGGTTAAACAGAAATGCTTTCTATTCCTTCACTTCCTGTCAGAGTTTTTGACTTGTTCTGATCGTGTGAGTGAATTTTTTGACgagaaatatttataaaaagtgCACATGTTCCAGGCAATGACTTGTTACCCAAGACAGATATAGTGTCTTGCACAAGCATTCAGCCCcctcttgaacttttccacatttagtAGTCTTACAACTTGGAACTGGTTAATTGCGTAACTAATCCTCATTTTCCCCAGTAACTTACTTTTGGTGGACATCCTCCTCTAGGCAGAATCAtagttgtgccatattctttcaaTTTTTAATAACGGATTTAATGGTGCAGTGTGGCatgtttgggatattttttataaccaaaccctgattgacacttttccagaacttggttttcctttgttttcatgatgctgtttgtttaggtaacTCTGGGGCCTTCCAGAAACAGCAGTCACAactttcacatttttgtttgttaataattttttaaactacattGGAAATTTCACCCCACTTCAGTATTAATTTTCTTGAAGATCCATGATATATCCAACTAAGTCCATGACACTTCCAAGTAGCAACGTCAAAACAAGGAAAAATTCAAGGGAGGTGAATACATATGCAAGGCACTTTGTGGTACTGAAAATAACCATTTGTTCAACTGAACACATTGTCCATTCCACAAAACTGCTTTACAAATCAGTCATGACCAGTTGAACACAGACATCACTATACCAGTAATGACTGATAAGTACCATTTTAATGTGTGACAGTATATGG
>XR_003403652.2
TATCCAGCAGATTTGTTTTGCCATCCTGGTTGAACTTTCTAGTGAGAGAGTAAAAAACTCCACTAGGATCATACATGTGCTTTAGCAGGAACGCAGGGGGCATAACCTAACAAATGTGTGGAGTCAATTGGTTTCCCAAGGGGGCGCTACTGAGGAGCTGGCTGACCAAGTCTCGACCAAGACTGCTGCTGCTCATCGCCGGCTTGAAGAGGCCTCAAGTCACCCTCATGAGAAGGAAAAGGATGAAGCGCACAAAAGTAGCAAAGGCCACGTAAGCGaaCCAGCAATCGCTTGCCACATTTCAACTGAATCCTTAAGATCAGGCCTGCCTACTGTAGAAATGGAAGAAGCTCAAGACACAGAGGAACTCATTTACCAATCTGTGTCATCTCGACGAACTAAAATCCACAGCAAACCAAAGCGAGGATGGAAAGCAAGGGTTTCACAAAGGTCCAGAGCTCCTGGCTAAAACTTGGACCCATTTTTACCCTATATCCGGCCATCTGTAGATCCCTCCTCTTTAAAAATACACGTTATGGTTAATTATGCTATGCTGGGTGTGACTGTATATTCTTTTACATTGTAGTGACAAATACTTGGTTAAACAGAAATGCTTTCTATTCCTTCACTTCCTGTCAGAGTTTTTGACTTGTTCTGATCGTGTGAGTGAATTTTTTGACgagaaatatttataaaaagtgCACATGTTCCAGGCAATGACTTGTTACCCAAGACAGATATAGTGTCTTGCACAAGCATTCAGCCCcctcttgaacttttccacatttagtAGTCTTACAACTTGGAACTGGTTAATTGCGTAACTAATCCTCATTTTCCCCAGTAACTTACTTTTGGTGGACATCCTCCTCTAGGCAGAATCAtagttgtgccatattctttcaaTTTTTAATAACGGATTTAATGGTGCAGTGTGGCatgtttgggatattttttataaccaaaccctgattgacacttttccagaacttggttttcctttgttttcatgatgctgtttgtttaggtaacTCTGGGGCCTTCCAGAAACAGCAGTCACAactttcacatttttgtttgttaataattttttaaactacattGGAAATTTCACCCCACTTCAGTATTAATTTTCTTGAAGATCCATGATATATCCAACTAAGTCCATGACACTTCCAAGTAGCAACGTCAAAACAAGGAAAAATTCAAGGGAGGTGAATACATATGCAAGGCACTTTGTGGTACTGAAAATAACCATTTGTTCAACTGAACACATTGTCCATTCCACAAAACTGCTTTACAAATCAGTCATGACCAGTTGAACACAGACATCACTATACCAGTAATGACTGATAAGTACCATTTTAATGTGTGACAGTATATGGCACAGCAAGTAGCAGTATTTAACTGGCTCCTGTTACAAAGCTTGGACTTAACCAGAAAGCACTAcgagtatttaaaaaaaaaaaaaaaaaaaaaaaaaaaa
>XR_004579106.1
TATCCAGCAGATTTGTTTTGCCATCCTGGTTGAACTTTCTAGTGAGAGAGTAAAAAACTCCACTAGGATCATACATGTGCTTTAGCAGGAACGCAGGGGGCATAACCTAACAAATGTGTGGAGTCAATTGGTTTCCCAAGGGGGCGCTACTGAGGAGCTGGCTGACCAAGTCTCGACCAAGACTGCTGCTGCTCATCGCCGGCTTGAAGAGGCCTCAAGTCACCCTCATGAGAAGGAAAAGGATGAAGCGCACAAAAGTAGCAAAGGCCACGTAAGCGCTACACCAAATCTGGTCAGTTCAGCTAACGGGTTTACATTGAGTGACGTCTTGGAACTGAGaaCCAGCAATCGCTTGCCACATTTCAACTGAATCCTTAAGATCAGGCCTGCCTACTGTAGAAATGGAAGAAGCTCAAGACACAGAGGAACTCATTTACCAATCTGTGTCATCTCGACGAACTAAAATCCACAGCAAACCAAAGCGAGGATGGAAAGCAAGGGTTTCACAAAGGTCCAGAGCTCCTGGCTAAAACTTGGACCCATTTTTACCCTATATCCGGCCATCTGTAGATCCCTCCTCTTTAAAAATACACGTTATGGTTAATTATGCTATGCTGGGTGTGACTGTATATTCTTTTACATTGTAGTGACAAATACTTGGTTAAACAGAAATGCTTTCTATTCCTTCACTTCCTGTCAGAGTTTTTGACTTGTTCTGATCGTGTGAGTGAATTTTTTGACgagaaatatttataaaaagtgCACATGTTCCAGGCAATGACTTGTTACCCAAGACAGATATAGTGTCTTGCACAAGCATTCAGCCCcctcttgaacttttccacatttagtAGTCTTACAACTTGGAACTGGTTAATTGCGTAACTAATCCTCATTTTCCCCAGTAACTTACTTTTGGTGGACATCCTCCTCTAGGCAGAATCAtagttgtgccatattctttcaaTTTTTAATAACGGATTTAATGGTGCAGTGTGGCatgtttgggatattttttataaccaaaccctgattgacacttttccagaacttggttttcctttgttttcatgatgctgtttgtttaggtaacTCTGGGGCCTTCCAGAAACAGCAGTCACAactttcacatttttgtttgttaataattttttaaactacattGGAAATTTCACCCCACTTCAGTATTAATTTTCTTGAAGATCCATGATATATCCAACTAAGTCCATGACACTTCCAAGTAGCAACGTCAAAACAAGGAAAAATTCAAGGGAGGTGAATACATATGCAAGGCACTTTGTGGTACTGAAAATAACCATTTGTTCAACTGAACACATTGTCCATTCCACAAAACTGCTTTACAAATCAGTCATGACCAGTTGAACACAGACATCACTATACCAGTAATGACTGATAAGTACCATTTTAATGTGTGACAGTATATGGCACAGCAAGTAGCAGTATTTAACTGGCTCCTGTTACAAAGCTTGGACTTAACCAGAAAGCACTAcgagtatttaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216612 False 1345 lncRNA 0.40 3 17416770 17423219
XR_003403652.2 False 1486 lncRNA 0.40 3 17416730 17423320
XR_004579106.1 True 1547 lncRNA 0.40 4 17416730 17423320

Neighbor

gene id symbol gene type direction distance location
mark1 mark1,LOC108271264,LOC108411950 coding upstream 85480 17281249 ~ 17331250 (+)
ptk7a ptk7,LOC108411955,LOC107702250,LOC107588446,LOC107732247 coding upstream 139275 17240492 ~ 17277455 (+)
soul4 LOC108270966,LOC108411954 coding upstream 181042 17224426 ~ 17235688 (+)
tle2b LOC108271164,LOC108430094,LOC107676970,LOC107719559 coding upstream 349774 17000105 ~ 17066956 (+)
trnak-cuu_26 NA coding upstream 386786 17029872 ~ 17029944 (+)
commd2 commd2 coding downstream 23080 17446400 ~ 17449781 (+)
wwtr1 wwtr1 coding downstream 30462 17453782 ~ 17497179 (+)
LOC113528887 LOC108271171,LOC108439433 coding downstream 83887 17507207 ~ 17532678 (+)
cp cp,LOC100533122 coding downstream 111124 17534444 ~ 17545067 (+)
senp5 LOC108270997 coding downstream 215469 17638789 ~ 17645112 (+)
G182932 NA non-coding upstream 333201 17079637 ~ 17083529 (+)
G182910 NA non-coding upstream 427211 16989319 ~ 16989519 (+)
G182906 NA non-coding upstream 455431 16960659 ~ 16961299 (+)
LOC117598387 NA non-coding upstream 559593 16852408 ~ 16857137 (+)
LOC117598408 zbtb7a,LOC108270628 non-coding upstream 691203 16708625 ~ 16725527 (+)
G183032 NA non-coding downstream 27137 17450457 ~ 17450736 (+)
G183058 LOC108270510 non-coding downstream 154322 17577642 ~ 17583785 (+)
G183478 NA non-coding downstream 301443 17724763 ~ 17725260 (+)
G183566 NA non-coding downstream 464807 17888127 ~ 17888353 (+)
G183578 NA non-coding downstream 479465 17902785 ~ 17902984 (+)
kcnh1b kcnh1b,LOC108270513,LOC108411957,LOC107689936,LOC107753489,LOC107570545,LOC105026838,LOC103369331,LOC106564801 other upstream 5305 17365698 ~ 17411425 (+)
LOC113528769 klc4 other upstream 194198 17196280 ~ 17222532 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other upstream 227415 17121899 ~ 17189315 (+)
G182877 NA other upstream 493808 16913258 ~ 16922922 (+)
G182819 NA other upstream 831787 16583303 ~ 16584943 (+)
LOC113536271 ankub1 other downstream 16476 17439796 ~ 17446248 (+)
anos1b LOC108271321,LOC108439428 other downstream 175144 17598464 ~ 17636395 (+)
mcf2l2 LOC108270998,LOC108439422,LOC106613920 other downstream 248851 17672171 ~ 17751502 (+)
ect2 ect2,LOC107674529,LOC107718889 other downstream 330856 17754176 ~ 17781814 (+)
G183549 NA other downstream 372125 17795445 ~ 17796619 (+)

Expression


Co-expression Network