G183058 (LOC108270510)


Basic Information

Item Value
gene id G183058
gene name LOC108270510
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17577642 ~ 17583785 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU216673
GTGGTTTCAAGACATGCTTTATTGCACTGATCACATGACTCTTTGTGTGAGCTACACAGCATGAACATCAAAAGTCTTTTCTGAAGTTTTTCATGCAGCTGGCTTGACTTTGAAGACTGGATCCTCAGCAAAGGCATCCTTTATAAGCTTGTCGTTGGTCTTGAACTCCGCTGGGCAGTTGGGGGATACAGTTTTGGGGAATTTGCCAATGACAGGCTCCATCTGTCCTGGTATCTGTGGGTCAGGGCGCATGGGAAGACCGGTGGGCGTGTCAGGTTTCTCAAGCAGATCAGGGACGGCAGGAAGGGTCATGGGTCTATCCAGCGATGGGAGGACTTGGACAGTTCCCTCGGGCTTCCTCACGGTGGTTTCATgttggtgctggtggtggtggtgatggtgctCGTGCTCGTGGAGGTGTCCATGCTTGTGCTCATGGTCCAGTGCTAGCTCGTGATCATGATCGTGTGTCTCACCTTCGGCCGTGTCCATAGTTGTGGTGGGCGGGGTGAATACCCTGGTCTTGTGTGTGGTTGTGGGCTTGGCCGTGGTGTGCATGGACATGGTCATGATCGTGGCTGTGCTCGTGAGAGTGTGCATGGCCATGGGCTTTACCATGTCCCTCACTGTGCTCATGGGTGTGGTGGTGCCCATGATCTTTATCATGATCGTGGGCATGCTTACCCTCATGCTTGTGATCATGTTTGTGGTCAGCAGTGTGATCATGGTCGTGTGTAGTTGGATGGGAATGGGAGAGTGTGTGATCGTGAGTGTGGTCATGTGAATGGGATGCACCACCAATATTCTCGTGATGATGGTCTGTCTCTCCACCATGTAAATGgttcttcttttcctcctctgcGGCCTTAAGAATAAATTAAGGCAACAGTTATAGCAAAACAAGTGTAATTCCTTATTACAAAATACTGGTAGTTCAAAGAATTTTGTCTTTTACCTGAGGTTCATAGATTTCACACTTAGATTCAATTAATTCATCACCACTGGAGCGACTGTATGTGGCTCTGCAGAATCCTTTGTGCTGAGAACAAAAAACATGACTTTACTGCTACActctatgttgtttttttaaacttagtCTAATATACCAAATTGAGTTTTGATCATTGTATTGCATATTATTGAAAATAGAgtcatgcagttttttttatttcaacaattgaatgaataaaaagtgtctTTTAGGACTTCATACTTACTGCAAACTCGCAGGTCATTATGTCACATTTTGAAGCCTCAGATATATCAGTTTTATTGGAGCAAACTGTCTCCTGAATGGTGAACTCCACATTATACATAGTGATCAAaccaagcTGCGATTGCTCTTGTAATATTAAGAGGAGCAAAGTAATTTGGAAGTGCACTCTCCTTATTAAACTTCTCCAAACCCATCTTCATTGTCTTCTCCACTTCTTTATTATCCAACGAGATCAGAATTGGGCAGTCAGGGCACATTTTACCGATTTTGGAGGCAGAGactgcaaaataaaacagatatttctttatttcttgatCATCTTCTAGTTGGCACATTAATATAGAAGGATTTATGTGATAGTATATTTTATGGCCTAAGAGAAAGACTTGATCATTACCTGGTCTGATGGTACAGCTGTATTTGTAGAGACGAGAGACTCTTTGAGGTTTGTTTACATACATCACAGCCTTACACTGACCATACACCTGGGTAGAacaacataaaaacatacattatgACCTTTGgtaattaaattacttttaaatgGAAACTTGAATGGAGTAGAGAGAGCGGTCATACCGGGTTTTCACCAAAGCTCCAAGTCTCACACTCCTTATAACTCTTCTTACTGAGGACATGGCATTTGGTCTCGAGGATATCAATTGTTAGATAAAACACCACCCCGGTTTCACcctgtaaatgaaaaatgatttctGACAACAAATCTTGAGAATACACAATACAGTTCATCCTGGGTATGAAATGAGTACCTGTATTTACCTGCATATTATATAACCTCAAACCCAAACAAGCAAACTCACGTGGCGTGTCTGATGGACATTGCTGACACGTTCCAGGCTGAAGACATAACCAGTGGTGCGATCCTGGTTGATTTTGTCTATAGCCTCTCCAGCAACAAAGGCAGTGGTTGCATCATTGCAAGAACTTGGTGGCAGGACCCCTACAGGGGCACCATGGACGCACACAAACGCCAGCAACAACAGCATGCACTGCTTCATGGTGGAGCATCTATCTCCTACACACTGCTGATCAAC
>TU216676
tgtgaatttatttcttatttaatttatattggTAAAggtattatattttgtttgtgcTTATAGAGGCATACAAAATAATCATTATCTATAACCAATCAGTGGTTTCAAGACATGCTTTATTGCACTGATCACATGACTCTTTGTGTGAGCTACACAGCATGAACATCAAAAGTCTTTTCTGAAGTTTTTCATGCAGCTGGCTTGACTTTGAAGACTGGATCCTCAGCAAAGGCATCCTTTATAAGCTTGTCGTTGGTCTTGAACTCCGCTGGGCAGTTGGGGGATACAGTTTTGGGGAATTTGCCAATGACAGGCTCCATCTGTCCTGGTATCTGTGGGTCAGGGCGCATGGGAAGACCGGTGGGCGTGTCAGCTTCCTTCCTGACCTCGCATTCATCAAAAGGCTTGGGGTTCACAATATGGCAGTTGGTCTCACTTAACGTTAAGGTCAATTGAGTTAGACATAAAGGCTGTCCTGGAAGACT

Function

NR:

description
PREDICTED: islet cell autoantigen 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216673 True 2271 lncRNA 0.43 2 17577740 17580114
TU216676 False 485 lncRNA 0.42 2 17577642 17583785

Neighbor

gene id symbol gene type direction distance location
cp cp,LOC100533122 coding upstream 32575 17534444 ~ 17545067 (+)
LOC113528887 LOC108271171,LOC108439433 coding upstream 44964 17507207 ~ 17532678 (+)
wwtr1 wwtr1 coding upstream 80463 17453782 ~ 17497179 (+)
commd2 commd2 coding upstream 127861 17446400 ~ 17449781 (+)
mark1 mark1,LOC108271264,LOC108411950 coding upstream 246392 17281249 ~ 17331250 (+)
senp5 LOC108270997 coding downstream 55004 17638789 ~ 17645112 (+)
phka2 phka2,LOC108439424,LOC107718215,LOC107715813 coding downstream 65150 17648935 ~ 17669132 (+)
nlgn1 nlgn1,LOC107593140,LOC106584306 coding downstream 294455 17878240 ~ 18133981 (+)
si:ch211-51h4.2 LOC108442512 coding downstream 843297 18427082 ~ 18551154 (+)
LOC117598435 NA coding downstream 1082791 18666576 ~ 18671367 (+)
G183032 NA non-coding upstream 126906 17450457 ~ 17450736 (+)
LOC113535983 NA non-coding upstream 154322 17416730 ~ 17423320 (+)
G182932 NA non-coding upstream 494113 17079637 ~ 17083529 (+)
G182910 NA non-coding upstream 588123 16989319 ~ 16989519 (+)
G182906 NA non-coding upstream 616343 16960659 ~ 16961299 (+)
G183478 NA non-coding downstream 140978 17724763 ~ 17725260 (+)
G183566 NA non-coding downstream 304342 17888127 ~ 17888353 (+)
G183578 NA non-coding downstream 319000 17902785 ~ 17902984 (+)
G183585 NA non-coding downstream 332218 17916003 ~ 17916210 (+)
G183787 NA non-coding downstream 845721 18429506 ~ 18437961 (+)
LOC113536271 ankub1 other upstream 131394 17439796 ~ 17446248 (+)
kcnh1b kcnh1b,LOC108270513,LOC108411957,LOC107689936,LOC107753489,LOC107570545,LOC105026838,LOC103369331,LOC106564801 other upstream 166217 17365698 ~ 17411425 (+)
LOC113528769 klc4 other upstream 355110 17196280 ~ 17222532 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other upstream 388327 17121899 ~ 17189315 (+)
G182877 NA other upstream 654720 16913258 ~ 16922922 (+)
anos1b LOC108271321,LOC108439428 other downstream 14679 17598464 ~ 17636395 (+)
mcf2l2 LOC108270998,LOC108439422,LOC106613920 other downstream 88386 17672171 ~ 17751502 (+)
ect2 ect2,LOC107674529,LOC107718889 other downstream 170391 17754176 ~ 17781814 (+)
G183549 NA other downstream 211660 17795445 ~ 17796619 (+)
LOC113526284 naaladl2 other downstream 582837 18166622 ~ 18409057 (+)

Expression


Co-expression Network