G183478


Basic Information

Item Value
gene id G183478
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17724763 ~ 17725260 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU217213
CAGTGATTCATTTCAATCAACAATGATTCATTGATATTGAATTGATTATACCACAACAGAGTGGTGGTATAATGTATGTCATTATGATGATTCATAATGAtgtacattatgtgtgtaattatgtgtgtaatcattgatatggttaCTTTTTCTGTGacgagacgtttatttagcatttttaaaaggagactccagtgtcagctttgtaacagtaggATGgaaggctttgcagtttctctgtaacatgacaagcatttattttgtcttatgatcttcaagagaaaaagagggaaaagagaCACATGAGCACAAACAaacaggaagagagggagagacagacacaggagAGGGAAGAACAGAGAAACAcatggaaatgaaaaagaatgtgaGCCCCGGCCCAGACAACGAcagtttatatctgctataatgtatgcaataac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU217213 True 440 lncRNA 0.36 2 17724763 17725260

Neighbor

gene id symbol gene type direction distance location
phka2 phka2,LOC108439424,LOC107718215,LOC107715813 coding upstream 55631 17648935 ~ 17669132 (+)
senp5 LOC108270997 coding upstream 79651 17638789 ~ 17645112 (+)
cp cp,LOC100533122 coding upstream 179696 17534444 ~ 17545067 (+)
LOC113528887 LOC108271171,LOC108439433 coding upstream 192085 17507207 ~ 17532678 (+)
wwtr1 wwtr1 coding upstream 227584 17453782 ~ 17497179 (+)
nlgn1 nlgn1,LOC107593140,LOC106584306 coding downstream 152980 17878240 ~ 18133981 (+)
si:ch211-51h4.2 LOC108442512 coding downstream 701822 18427082 ~ 18551154 (+)
LOC117598435 NA coding downstream 941316 18666576 ~ 18671367 (+)
si:ch211-247n2.1 kcnmb2,LOC108428381 coding downstream 993964 18719224 ~ 18741759 (+)
pik3ca pik3ca,LOC107574159 coding downstream 1038839 18764099 ~ 18783878 (+)
G183058 LOC108270510 non-coding upstream 140978 17577642 ~ 17583785 (+)
G183032 NA non-coding upstream 274027 17450457 ~ 17450736 (+)
LOC113535983 NA non-coding upstream 301443 17416730 ~ 17423320 (+)
G182932 NA non-coding upstream 641234 17079637 ~ 17083529 (+)
G182910 NA non-coding upstream 735244 16989319 ~ 16989519 (+)
G183566 NA non-coding downstream 162867 17888127 ~ 17888353 (+)
G183578 NA non-coding downstream 177525 17902785 ~ 17902984 (+)
G183585 NA non-coding downstream 190743 17916003 ~ 17916210 (+)
G183787 NA non-coding downstream 704246 18429506 ~ 18437961 (+)
G183805 NA non-coding downstream 843365 18568625 ~ 18569959 (+)
anos1b LOC108271321,LOC108439428 other upstream 88368 17598464 ~ 17636395 (+)
LOC113536271 ankub1 other upstream 278515 17439796 ~ 17446248 (+)
kcnh1b kcnh1b,LOC108270513,LOC108411957,LOC107689936,LOC107753489,LOC107570545,LOC105026838,LOC103369331,LOC106564801 other upstream 313338 17365698 ~ 17411425 (+)
LOC113528769 klc4 other upstream 502231 17196280 ~ 17222532 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other upstream 535448 17121899 ~ 17189315 (+)
ect2 ect2,LOC107674529,LOC107718889 other downstream 28916 17754176 ~ 17781814 (+)
G183549 NA other downstream 70185 17795445 ~ 17796619 (+)
LOC113526284 naaladl2 other downstream 441362 18166622 ~ 18409057 (+)
adgrl4 adgrl4,LOC102783218 other downstream 1529671 19254931 ~ 19270261 (+)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other downstream 1761068 19486328 ~ 19487784 (+)

Expression


Co-expression Network