G183787


Basic Information

Item Value
gene id G183787
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 18429506 ~ 18437961 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU217556
tactttaaacGTTTTTTCTGTTGATTAACGTGACTTTGTTGACGTGATTAAAAGTGATCACGAAGTGTGTTGAGTGACTGCGCAATTCTAATATGTTTCGGAGAATCTAATTTTGCCGAATGCTAAATTGAGGCCGAATTTAATTGAGGTCATAGGTGTAAATGATTAACGCTGTCTTAAGTTCATTTAAGAGTGTACCATATAATGTTCGTGTATggcaaaatgtctgtaattttaaacacattagcAATGAGTTGTTTGCTATGTAGTGGTACAGCTAACCGTGCACCTGTTGTATTAGCTGTTCAGTAGCCATATTGAATGCTAtgcatgcacatgctcagtgtgTAACCCGATGCAAATCACATTGTAAACGCGTTCTAAATGCAACAGTGGTCGATGTATTTCTCttgatatgtgtgtttgtgacacatTTGTGTTTGGTTCTTTTGAGTAATGTGAGACACTTGTTAAGTGAACTAGGAACTTTGGTTTACTCTTTAAGTTTTGTATATGGAATTTGTTGGCGCACATattctgctctctgtgtgttATGTAACTCCATGTTTTATTATGTGAAATAAGTAAGGTAAATGGATGCATATGTATacgtgtatgttgtgtgtatgtattcatATCACGTTATGTTGTGTGTACTGTATCCATATCACGTTATCCCATGTATAGATGTCATGTAACATGAGAAGTGTTCATAGTTACTAATAGGTTCGATCTCAGAAGTAAATGACGCGCCAAGGGAACGAcactcattttgtctgtctctattgtttcacagtttcacagGTACACAGTGCTTAACCGCCTGTGTGTCCTTAGTTGCCGACCCAGATATCCCCTAGGTCTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU217556 True 867 lncRNA 0.37 2 18429506 18437961

Neighbor

gene id symbol gene type direction distance location
nlgn1 nlgn1,LOC107593140,LOC106584306 coding upstream 295525 17878240 ~ 18133981 (+)
phka2 phka2,LOC108439424,LOC107718215,LOC107715813 coding upstream 760374 17648935 ~ 17669132 (+)
senp5 LOC108270997 coding upstream 784394 17638789 ~ 17645112 (+)
cp cp,LOC100533122 coding upstream 884439 17534444 ~ 17545067 (+)
LOC113528887 LOC108271171,LOC108439433 coding upstream 896828 17507207 ~ 17532678 (+)
LOC117598435 NA coding downstream 228615 18666576 ~ 18671367 (+)
si:ch211-247n2.1 kcnmb2,LOC108428381 coding downstream 281263 18719224 ~ 18741759 (+)
pik3ca pik3ca,LOC107574159 coding downstream 326138 18764099 ~ 18783878 (+)
LOC113531757 NA coding downstream 349010 18786971 ~ 18794580 (+)
LOC113527405 NA coding downstream 397212 18835173 ~ 18842544 (+)
G183585 NA non-coding upstream 513296 17916003 ~ 17916210 (+)
G183578 NA non-coding upstream 526522 17902785 ~ 17902984 (+)
G183566 NA non-coding upstream 541153 17888127 ~ 17888353 (+)
G183478 NA non-coding upstream 704246 17724763 ~ 17725260 (+)
G183058 LOC108270510 non-coding upstream 845721 17577642 ~ 17583785 (+)
G183805 NA non-coding downstream 130664 18568625 ~ 18569959 (+)
G183798 NA non-coding downstream 138771 18576732 ~ 18588716 (+)
G183797 NA non-coding downstream 155737 18593698 ~ 18597240 (+)
G183796 NA non-coding downstream 160757 18598718 ~ 18604922 (+)
G184167 NA non-coding downstream 453278 18891239 ~ 18894875 (+)
LOC113526284 naaladl2 other upstream 20449 18166622 ~ 18409057 (+)
G183549 NA other upstream 632887 17795445 ~ 17796619 (+)
ect2 ect2,LOC107674529,LOC107718889 other upstream 647692 17754176 ~ 17781814 (+)
mcf2l2 LOC108270998,LOC108439422,LOC106613920 other upstream 678004 17672171 ~ 17751502 (+)
anos1b LOC108271321,LOC108439428 other upstream 793111 17598464 ~ 17636395 (+)
adgrl4 adgrl4,LOC102783218 other downstream 816970 19254931 ~ 19270261 (+)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other downstream 1048367 19486328 ~ 19487784 (+)
LOC113546543 NA other downstream 1088916 19526877 ~ 19548212 (+)
si:ch73-40i7.5 apba3,si:ch73-40i7.5,LOC108271288,LOC107750992,LOC107592849,LOC107661085,LOC105938289,LOC107096970,LOC105910839,LOC106516779,LOC107550530,LOC102779936,LOC101467998 other downstream 1094120 19532081 ~ 19554969 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other downstream 1257266 19695227 ~ 19700274 (+)

Expression


Co-expression Network