G184167


Basic Information

Item Value
gene id G184167
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 18891239 ~ 18894875 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU217958
TTATATGTATAAGTCATCTctttaacatatttataaataaacttcaAAGCGAAACAGACATATGAAATGATAAACACAGTTCAATCAGCAAAATAATTGTTTTGTGCTGAATGTAAATGCCACACTCTAACTAAGATCCTcgtgactgaatgaatgaaataaaatttcgTGGAATGTAAggtgatgagaaaaaaaaaaacgtgaagcaaaatacagtacacagtTGAGGATATTCTTGAAGAGTAACAGTGTGAACTGGGGAAGTGGAGTCCCAGATGAAAAGCCTGTCTTTTCCATGCAGTTGTTAGGCCTGTCACATTATACATAATGACCTAATCATGAGATTACTGTATAtgagctgataaaaaaaaagaagtgtgtcctgtgtgtctcatctagagtgtattcctgcttcacattcgagtattcctgggataggctctggatccgcTGACCAGAATaaacttactgaaaatgaatgaatgataaatacggaataaaacacttgttataaaaaaataatcagtgatgtggtTGTGTAATGTGGCCCGGTGCAAAACggacttactgttaccaccaagttgattattttcctataatagaatgtaaagtgttttattcctcttgtactacagcaatttgtcaacgattacaatgtctaatttattgaagaacaacatattgtacttttaaacgtttataattacatttaacactGTGGACTATCTGCAAAAGACGTTTCTGTTATGACGTACATTACAGCaactataaatagtcattccctccccagcctctctttttctctctcgtgaagttaatgaaacaacaaaaaaaatacagcttgtcatgttatcaaaaAACTGtactttgtcctgaagactctgtCATGGAGGAAAACCTATTGACCGGTACAAAGCGCTGATACCTGAGACtccttaaataaacattaaacatttccttacagaaaaccgcatcatatcaacgattatatgtCTCTGCtaattaataacacattttatttatctgtttattaatagACTTAGATTTTGTGGTGCATCcttcatacaagtccctgtgaatatgttgttactatagaaatagaaatagtaatatattagaatgagtgcattaatatacagtgcattcagaaagtattcaaaCCCCTacattttttgacattttttttatgttgcagcctttcgctaaaatgctttatttatttatttattattgttttttttttacatcagtctacactccatactccataatgacaaagcaaaaaccagatgTCTGAtgactttgcaaatttatttaaaaaaccctgaaatatcacattgacataAATATTCAGTCCCTTTGCCttgacacttgaaatttagctcaggtgcatcccatttctccagatcatctttgagatgtttccaCACTTTcattggagtccacctgtggcaaattcaagtgattggatgtgatttggaaagacacacacctgtctctaTAAGCTCtgagcaaaaaccaagccatgggGTCAAAGGAACTGCCTTCAGAGCTCAGAGCTGGGGTGTGGAttgatgtagaaaaaaaataatttaaagcattttatcatAAGGCTGCAAtataacatgtgaaaaatgaaggggtctgaatactttctgaatgcactgtaaacctgtcatttcaattacagctgcatttactctcagagctgctgttatagtaaattaatcaacaccttctgatcaatcagcttcaagaactcaacagtgctgtggtataaaataactTAAATTCCATCATGTTTCCATACTGTATGTAGTCAGCCGAAGTTAACCAGCTTATTATTCTTAATGAGCTTATTAATCTACTCAAATCGCTGCATCATTGTCACTATTCTCGGTCAAAGGCTTTAAACCTTAAATCTTTAACTTAGTTTTGTTGTGTAATATTTAGTGTAAATAGACTAACACTTGCTAAAATGTGTAGAGATTTAAGATTAGTATAGAATAGTACATTATTAATTTCCACAGTTTTTGCTATTGTACCTTCTTGTGTATTTCAGTAAtaagttttatatatttcagtatttgtAGTTTGTCTCAAATTTTCTAATCGGTCTAGAAGGCAGAGAAAAAACTCTACGGTCAATGTTGATAAATGCCGATAAACAGtatagtgcaaaagtttgtatcccctTATaagaaaccaaagaaaatgaaatcatttaGTGCGTACCTTTATCATCACACttaacaaaaaaagttaaataatgaattgtaatttttttctttatatagattttatatataacagaTGTGATATATTGTTAACTTTAGATTGTATCGAAAGTTCTTTTCAaactatttttcttttgaatattCCTTACATTTTAGATTGTTTTCTTATTGCTGGATAGACCCAAATTTTTTAGAATTTAACGACAATTCTAATTTATTTGTAGATAAATTAGTTGAGTAAAAATTTCCCTTTTCCATCCTAAAACCTTGAAAGATGCAAATTTTTTTGCCATCAACTACATAGTCATAATTACACTACTATACgacaaatataaaattttataatcgTGACAGGCCTAGCTGGCGTACCAATCTTACAAATGTAATGAGCATCTTCACTAcgtcaaaaaaattaaacaaaaaaagtgatGTAACATTTCAATATGTATTTTTCTACTGTCTGCTCTGGCTGTTATTATGAattttgtatataataataatAATAATAATTCTGAATAATAATTCTGAATAATAATCTTTCAGAATACTCTTTCAGTAGGCATttgaaattctctctctctctcacacacacacacacacacacacacacacacacacacacacaccccacccacacacagtgaagcacaagcatacacacattcactctaCGTAGGCGGGAAGTGAATATGTCACGAACAGCATAAAGCTTAAGAACTGAATTAGCACGTAACTGATGTAATATGTTGCTGGCAAGAACAAGCAGCACCAATCCTTAAAAAAGTGCATTATCACAgactaatagtaataatttccTTAAACACAAGTAAAAGTGGCCTCTTCATTCATTAccgttaaaaaaataattacaagaagaaaacaacatttttcaAAAACGATGCTAGAAacataagttaaaaaaaaaaaaaaaaagagagaaacaaactaAGAGTGTGTCTGGTGCTTTGTGTTGCAGCCCAAAAGAGAAACTGCATTTCGTGCCGAACTTCATCTACAGCTTGGTGCAAATCGCACACAGAGATCATGGCACTCATGAATCTCTCGCAACCTCATGGAATGAAGGAATGTGAAACGGTCTAAACACACATGAAGGTCGGAGCTTCACGCTCACCTCTGAAGGAGTgcaaagtaaaggaaaaaaaaaatcccaatatGTAAGAGCCCTTTGAGAACTCTTGTCCTACTAAAACTCCATGAACTCCTTAGCGCACTTCTCCGTGTCTGAGATCCGGATCTCCTCCTCTTCATAGTCATCGAAGTTGCTCGTGTCACCTGGGCCTCTGCACTTTGGTATGATGGGAGCCTCAACCTGAAAACAGAACGCTTTCAAAGTGTGTCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU217958 True 3599 lncRNA 0.34 2 18891239 18894875

Neighbor

gene id symbol gene type direction distance location
uox uric,LOC103030682,LOC108430123 coding upstream 14163 18865130 ~ 18877076 (+)
ctbs ctbs coding upstream 38870 18848553 ~ 18852369 (+)
LOC113527405 NA coding upstream 48695 18835173 ~ 18842544 (+)
LOC113531757 NA coding upstream 96659 18786971 ~ 18794580 (+)
pik3ca pik3ca,LOC107574159 coding upstream 107361 18764099 ~ 18783878 (+)
ttll7 ttll7 coding downstream 17443 18912318 ~ 18970547 (+)
vtg3 LOC108270710 coding downstream 377077 19271952 ~ 19287643 (+)
LOC113533188 ifi30 coding downstream 394392 19289267 ~ 19297548 (+)
mpv17l2 mpv17l2 coding downstream 405746 19300621 ~ 19309461 (+)
LOC113524462 NA coding downstream 424412 19319287 ~ 19322971 (+)
G183796 NA non-coding upstream 286317 18598718 ~ 18604922 (+)
G183797 NA non-coding upstream 293999 18593698 ~ 18597240 (+)
G183798 NA non-coding upstream 302523 18576732 ~ 18588716 (+)
G183805 NA non-coding upstream 321280 18568625 ~ 18569959 (+)
G183787 NA non-coding upstream 453278 18429506 ~ 18437961 (+)
G184309 NA non-coding downstream 117532 19012407 ~ 19012612 (+)
G184340 NA non-coding downstream 186377 19081252 ~ 19081485 (+)
G184504 NA non-coding downstream 564943 19459818 ~ 19461690 (+)
G184503 NA non-coding downstream 566949 19461824 ~ 19462843 (+)
G184614 NA non-coding downstream 653788 19548663 ~ 19602639 (+)
LOC113526284 naaladl2 other upstream 482182 18166622 ~ 18409057 (+)
G183549 NA other upstream 1094620 17795445 ~ 17796619 (+)
ect2 ect2,LOC107674529,LOC107718889 other upstream 1109425 17754176 ~ 17781814 (+)
mcf2l2 LOC108270998,LOC108439422,LOC106613920 other upstream 1139737 17672171 ~ 17751502 (+)
anos1b LOC108271321,LOC108439428 other upstream 1254844 17598464 ~ 17636395 (+)
adgrl4 adgrl4,LOC102783218 other downstream 360056 19254931 ~ 19270261 (+)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other downstream 591453 19486328 ~ 19487784 (+)
LOC113546543 NA other downstream 632002 19526877 ~ 19548212 (+)
si:ch73-40i7.5 apba3,si:ch73-40i7.5,LOC108271288,LOC107750992,LOC107592849,LOC107661085,LOC105938289,LOC107096970,LOC105910839,LOC106516779,LOC107550530,LOC102779936,LOC101467998 other downstream 637206 19532081 ~ 19554969 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other downstream 800352 19695227 ~ 19700274 (+)

Expression


Co-expression Network