G184340


Basic Information

Item Value
gene id G184340
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19081252 ~ 19081485 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU218173
gtgcaattcccaaaccaggcagtgatgcagctgcacaggatgctctcgatagaccctctgtagaacatggtgaggatggggggtgggagatgtgctttcctcagtcttctcagaaagtacaggtgctgctgggctttcttcgttatggaactggtgttgagggaccaggtgaggttctccgccaggtgaacaccaagaaacttggtgctcttgacgatcttcATGGAGGAGCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218173 True 234 lncRNA 0.53 1 19081252 19081485

Neighbor

gene id symbol gene type direction distance location
ttll7 ttll7 coding upstream 110705 18912318 ~ 18970547 (+)
uox uric,LOC103030682,LOC108430123 coding upstream 204176 18865130 ~ 18877076 (+)
ctbs ctbs coding upstream 228883 18848553 ~ 18852369 (+)
LOC113527405 NA coding upstream 238708 18835173 ~ 18842544 (+)
LOC113531757 NA coding upstream 286672 18786971 ~ 18794580 (+)
vtg3 LOC108270710 coding downstream 190467 19271952 ~ 19287643 (+)
LOC113533188 ifi30 coding downstream 207782 19289267 ~ 19297548 (+)
mpv17l2 mpv17l2 coding downstream 219136 19300621 ~ 19309461 (+)
LOC113524462 NA coding downstream 237802 19319287 ~ 19322971 (+)
LOC113535669 pde4c coding downstream 243248 19324733 ~ 19403219 (+)
G184309 NA non-coding upstream 68640 19012407 ~ 19012612 (+)
G184167 NA non-coding upstream 186377 18891239 ~ 18894875 (+)
G183796 NA non-coding upstream 476330 18598718 ~ 18604922 (+)
G183797 NA non-coding upstream 484012 18593698 ~ 18597240 (+)
G183798 NA non-coding upstream 492536 18576732 ~ 18588716 (+)
G184504 NA non-coding downstream 378333 19459818 ~ 19461690 (+)
G184503 NA non-coding downstream 380339 19461824 ~ 19462843 (+)
G184614 NA non-coding downstream 467178 19548663 ~ 19602639 (+)
G184617 gamt,LOC107747770,LOC107685360,LOC107597217,LOC107757934 non-coding downstream 579607 19661092 ~ 19664491 (+)
G184718 NA non-coding downstream 622150 19703635 ~ 19704250 (+)
LOC113526284 naaladl2 other upstream 672195 18166622 ~ 18409057 (+)
G183549 NA other upstream 1284633 17795445 ~ 17796619 (+)
ect2 ect2,LOC107674529,LOC107718889 other upstream 1299438 17754176 ~ 17781814 (+)
mcf2l2 LOC108270998,LOC108439422,LOC106613920 other upstream 1329750 17672171 ~ 17751502 (+)
anos1b LOC108271321,LOC108439428 other upstream 1444857 17598464 ~ 17636395 (+)
adgrl4 adgrl4,LOC102783218 other downstream 173446 19254931 ~ 19270261 (+)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other downstream 404843 19486328 ~ 19487784 (+)
LOC113546543 NA other downstream 445392 19526877 ~ 19548212 (+)
si:ch73-40i7.5 apba3,si:ch73-40i7.5,LOC108271288,LOC107750992,LOC107592849,LOC107661085,LOC105938289,LOC107096970,LOC105910839,LOC106516779,LOC107550530,LOC102779936,LOC101467998 other downstream 450596 19532081 ~ 19554969 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other downstream 613742 19695227 ~ 19700274 (+)

Expression


Co-expression Network