smim7 (smim7,LOC107568062,LOC107703137,LOC107658516)


Basic Information

Item Value
gene id smim7
gene name smim7,LOC107568062,LOC107703137,LOC107658516
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19486328 ~ 19487784 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU218362
cagaagaagaagaagaagaggctGCAGGGTGACAAAATGATCGGGGATCTGTTAATTTTCTGCACTTTGTTAATGAACGCCGGGGCggttttaaactttaaactgaaaaggaaagagacGCAAACGCACGGGTTCGGCGATGATCCGGGCCGATCAACTACAgGTGATAACATCAGGGAGTTTTTACTGAGTCTGCGCTATTTCCGCATTTTTATAGCGCTGTGGAACATCTTCATCATGTTCTGCATGATCTTGTTGTTTGGATCATAACCCACTACATTCCCAGCCTGGACACTAACATGAAGGACAATCCtcaacacttttctttttcGGTAGTGGGATGTTCAAATCTGGCTGATCCTTCAAGAACCTCAAGAACCTTTGGAGCAGGAAATTTGTCAGTCATCAGTCATTTCCTCCATTGTATCCACTAAGCCAGTGTCTTAGGGGTCAACTAAAGGTTATTTTGAAAGTCTTAAGGACTAATGTTGACCGTTACTCTCTTAATTAATGTCAAACTGACATATTGCCTAAATTTGCATGTCAGTTGATGTGCTTGTGATCGTCAGCAGATACAacgttttgttttgggttttttctttttgtgaatATCAGCTGCACGTTCAATGGCTAACAGAGCAGTGCCCTGAAATAAATCATCTGTTTTtctcaaaaaatattattttctgttaaattaGGGAACTTCTAGCAAGTTAAAGGGTCAATACTACTCAGATTCTTTTATTAAATGAGAAAAGTTTTAATACAAATTACTATAAATGCTGAAAGGATAGCTGATGGTTTTAGTCAGTTTAGATGCAAAAgtcatttttgttctttgcAAGAAAAACACACCTTCTATTAAAAGTGACTT
>TU218363
cagaagaagaagaagaagaggctGCAGGGTGACAAAATGATCGGGGATCTGTTAATTTTCTGGTAAAAATCTTCTTCCTACACTTCTTACCCTTCCTACACTGTCTATGATGTAGAGTTTTCAGGCAGGGTTTCTGCTTTGTTCAGATGGACAGTATAATCTGAGACAGTCTGATGTGAAGTAGTCAGACAGCTCAGCTGtgtttgttgttgatgatgatcaGACTTTCCACGTCACCCATCTGATTTGTTGCTTTTCAGCACTTTGTTAATGAACGCCGGGGCggttttaaactttaaactgaaaaggaaagagacGCAAACGCACGGGTTCGGCGATGATCCGGGCCGATCAACTACAgGTGATAACATCAGGGAGTTTTTACTGAGTCTGCGCTATTTCCGCATTTTTATAGCGCTGTGGAACATCTTCATCATGTTCTGCATGATCTTGTTGTTTGGATCATAACCCACTACATTCCCAGCCTGGACACTAACATGAAGGACAATCCtcaacacttttctttttcGGTAGTGGGATGTTCAAATCTGGCTGATCCTTCAAGAACCTCAAGAACCTTTGGAGCAGGAAATTTGTCAGTCATCAGTCATTTCCTCCATTGTATCCACTAAGCCAGTGTCTTAGGGGTCAACTAAAGGTTATTTTGAAAGTCTTAAGGACTAATGTTGACCGTTACTCTCTTAATTAATGTCAAACTGACATATTGCCTAAATTTGCATGTCAGTTGATGTGCTTGTGATCGTCAGCAGATACAacgttttgttttgggttttttctttttgtgaatATCAGCTGCACGTTCAATGGCTAACAGAGCAGTGCCCTGAAATAAATCATCTGTTTTtctcaaaaaatattattttctgttaaattaGGGAACTTCTAGCAAGTTAAAGGGTCAATACTACTCAGATTCTTTTATTAAATGAGAAAAGTTTTAATACAAATTACTATAAATGCTGAAAGGATAGCTGATGGTTTTAGTCAGTTTAGATGCAAAAgtcatttttgttctttgcAAGAAAAACACACCTTCTATTAAAAGTGACTT
>XM_026923920.2
GCGACGGTGAGTTTACAGTCAATGTTCAACACTTTTACTGctgccagaagaagaagaagaagaggctGCAGGGTGACAAAATGATCGGGGATCTGTTAATTTTCTGCACTTTGTTAATGAACGCCGGGGCggttttaaactttaaactgaaaaggaaagagacGCAAACGCACGGGTTCGGCGATGATCCGGGCCGATCAACTACAgGTGATAACATCAGGGAGTTTTTACTGAGTCTGCGCTATTTCCGCATTTTTATAGCGCTGTGGAACATCTTCATCATGTTCTGCATGATCTTGTTGTTTGGATCATAACCCACTACATTCCCAGCCTGGACACTAACATGAAGGACAATCCtcaacacttttctttttcGGTAGTGGGATGTTCAAATCTGGCTGATCCTTCAAGAACCTCAAGAACCTTTGGAGCAGGAAATTTGTCAGTCATCAGTCATTTCCTCCATTGTATCCACTAAGCCAGTGTCTTAGGGGTCAACTAAAGGTTATTTTGAAAGTCTTAAGGACTAATGTTGACCGTTACTCTCTTAATTAATGTCAAACTGACATATTGCCTAAATTTGCATGTCAGTTGATGTGCTTGTGATCGTCAGCAGATACAacgttttgttttgggttttttctttttgtgaatATCAGCTGCACGTTCAATGGCTAACAGAGCAGTGCCCTGAAATAAATCATCTGTTTTtctcaaaaaatattattttctgttaaattaGGGAACTTCTAGCAAGTTAAAGGGTCAATACTACTCAGATTCTTTTATTAAATGAGAAAAGTTTTAATACAAATTACTATAAATGCTGAAAGGATAGCTGATGGTTTTAGTCAGTTTAGATGCAAAAgtcatttttgttctttgcAAGAAAAACACACCTTCTATTAAAAGTGACTTGCATTA

Function

symbol description
smim7 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM7 (small integral membrane protein 7).

NR:

description
small integral membrane protein 7

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218362 False 874 lncRNA 0.38 5 19486372 19487778
TU218363 True 1072 lncRNA 0.39 4 19486372 19487778
XM_026923920.2 False 924 mRNA 0.39 5 19486328 19487784

Neighbor

gene id symbol gene type direction distance location
crtc1b crtc1,LOC107747695 coding upstream 28154 19442164 ~ 19458174 (+)
klhl26 klhl26,LOC107680559,LOC107747058,LOC107597147 coding upstream 47147 19429911 ~ 19439181 (+)
rab3ab rab3a,rab3ab,LOC107680521,LOC107665838,LOC107597148,LOC107553558 coding upstream 70153 19405686 ~ 19416175 (+)
LOC113535669 pde4c coding upstream 83109 19324733 ~ 19403219 (+)
LOC113524462 NA coding upstream 163357 19319287 ~ 19322971 (+)
LOC113535100 med26 coding downstream 2648 19490432 ~ 19495901 (+)
slc35e1 slc35e1,LOC107750991,LOC107752163 coding downstream 10579 19498363 ~ 19505101 (+)
si:ch73-40i7.2 LOC108271407 coding downstream 21249 19509033 ~ 19524997 (+)
LOC117595669 pex11g coding downstream 39262 19527046 ~ 19531687 (+)
zgc:172302 LOC108271263 coding downstream 67928 19555712 ~ 19584739 (+)
G184503 NA non-coding upstream 23485 19461824 ~ 19462843 (+)
G184504 NA non-coding upstream 24638 19459818 ~ 19461690 (+)
G184340 NA non-coding upstream 404843 19081252 ~ 19081485 (+)
G184309 NA non-coding upstream 473716 19012407 ~ 19012612 (+)
G184167 NA non-coding upstream 591453 18891239 ~ 18894875 (+)
G184614 NA non-coding downstream 60879 19548663 ~ 19602639 (+)
G184617 gamt,LOC107747770,LOC107685360,LOC107597217,LOC107757934 non-coding downstream 173308 19661092 ~ 19664491 (+)
G184718 NA non-coding downstream 215851 19703635 ~ 19704250 (+)
G184823 NA non-coding downstream 320929 19808713 ~ 19809254 (+)
G184882 NA non-coding downstream 433687 19921471 ~ 19947483 (+)
adgrl4 adgrl4,LOC102783218 other upstream 216067 19254931 ~ 19270261 (+)
LOC113526284 naaladl2 other upstream 1077271 18166622 ~ 18409057 (+)
G183549 NA other upstream 1689709 17795445 ~ 17796619 (+)
ect2 ect2,LOC107674529,LOC107718889 other upstream 1704514 17754176 ~ 17781814 (+)
mcf2l2 LOC108270998,LOC108439422,LOC106613920 other upstream 1734826 17672171 ~ 17751502 (+)
LOC113546543 NA other downstream 39093 19526877 ~ 19548212 (+)
si:ch73-40i7.5 apba3,si:ch73-40i7.5,LOC108271288,LOC107750992,LOC107592849,LOC107661085,LOC105938289,LOC107096970,LOC105910839,LOC106516779,LOC107550530,LOC102779936,LOC101467998 other downstream 44297 19532081 ~ 19554969 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other downstream 207443 19695227 ~ 19700274 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other downstream 340202 19827986 ~ 19834414 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other downstream 348361 19836145 ~ 19845238 (+)

Expression


Co-expression Network