G184504


Basic Information

Item Value
gene id G184504
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19459818 ~ 19461690 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU218370
GTCTGACATTCACGTGATATAAACACATGTTGTGTTCGAAATGAAAAGTTTTAAGGAATCACATctttatatgtatgtacactATGGATTTACAGGAAAACTGTTATTCACTGTTTTATGTCACTTGAAATGAATGATTTAATTCAGTGTAAGTGTTATAAACCTGCTTTATGCAGCCTGGACATTAAAGCACTTGGGCTCTGCGCCAAACTACTTTGGTACCAAAATCCTGGCGAACATAATGCCATTAATTGTTTGTGAACAATTTTATTGGCAGCATTAGTTAAAACAAATTCTTGGCTTTTGGTTGTATTCAGTAAGAGTTTATTAACGAATCACCAAATtcgtttcgttttttttttgttatagcaACAGTGTGGTTATATCAGCCAAGAGGCTTGATTCAGCCAAGAGGCTTGATCTATGTGATATATATGCAACGCAGTCCTTAAGTAATTTAGACAGTGACGCATTCTTGTTTTGGTTCATCACATTAGACTGAAATGAACCGATCTGTTACTGCAAAATATCTTTGATGCTAAATTTTGACCCTACCATATCAcgtgattggctaattggaCAACTGCATAagtgagcaggtgtacaggtgcttCAGATGAAGAGCCAGATGAGTGTATATGGCCTATATTGTTTGACCTGCAAACATGACCAGACACATGATATCTTCTCTGAGTCTCTCATTGTACTGGGGACCTTTGGCATTGACTTTTCTGaaagttaaatacattttaatttgggTGACTTGACTTTATATTTTAGGTTATTCTGCTGCATGGGGAAGCATCCTTCACTGCACTCAGTCATGTGAGTCACATAGCTATGCCAACAAGTTTGGATCATGAATggttatgtattttttttttcccgaacTGTCAAATATGTATCTGATGGAATTGTAATGGCTTACTTTATAATCTTTCTTGGTCCTCATGGTGATGCGTATTTTGGTCGGCTGCTCTTTTCTGATGCAGCCAATAGTGCGATGGTACTATTGCGATCAGATCTCAGGCTGCTCTTGCCAAGGTTAATGATCTCTGCCGTGATAAAGACGGCATTAAAATAATCCTGTCCAGCACTGTTTGACATACTGGGGTCACCCTTGCCtccattctttcttttcagcCACGCATAAATGCTGTAACCAAATTTTCACCTTCATATTATTACTCATCTCCGTCCCTCTGTGAGCATTTCAGATGCAGAAAAATCGATTCATGCTTTCATCACATCACGTCTTGATTATTGTAACTCACTTTTCTCAGGACTCACCCTCAAATCCATGAACAAACTTGAATCTATCCAAAACATTGCTGCTAGATTattcacacatacaaacaaatcTGTTCATATTCCTCCTGTTCTCCAGCAGTTACACTTGTTACCGGTTACAGCCTGCATCCAATTCAGAATTCTTATCATCATGTATAAAGCGCTTCATGGTCTTGCCCCTTTTTACCTCTCTGAAGATCTACCCTAACCCCACACACGAGTTTGTTCGCTCAGATCTTCAGGTACTGGTCTTCTTACAGTCCCTTTCACTAAACTCTTCACAGTTGGAGCTAGATCCTTCAGTGCTACAGCTCCCTGTCTTTGGAATGCACTCCCTCAGTATCTCCAAGACTGTACAAGCATTACCTTATTTAAATCAAAACTCTAGACACACATGTTCACTACCACTTTCCCTTCCCACACATAATATCATTTCTCCTTTCTCGGCTATATCTGTGGTTTTCTGCAAACTACTCCTGAAAGAAATGTTATGTCTTCTCTTTTAAAATGTCAGTTGCTATTGCAtacctttttaattttatgcttttaatgggttttttttattattcctttgTAAAGTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218370 True 1873 lncRNA 0.38 1 19459818 19461690

Neighbor

gene id symbol gene type direction distance location
crtc1b crtc1,LOC107747695 coding upstream 1644 19442164 ~ 19458174 (+)
klhl26 klhl26,LOC107680559,LOC107747058,LOC107597147 coding upstream 20637 19429911 ~ 19439181 (+)
rab3ab rab3a,rab3ab,LOC107680521,LOC107665838,LOC107597148,LOC107553558 coding upstream 43643 19405686 ~ 19416175 (+)
LOC113535669 pde4c coding upstream 56599 19324733 ~ 19403219 (+)
LOC113524462 NA coding upstream 136847 19319287 ~ 19322971 (+)
LOC113535100 med26 coding downstream 28742 19490432 ~ 19495901 (+)
slc35e1 slc35e1,LOC107750991,LOC107752163 coding downstream 36673 19498363 ~ 19505101 (+)
si:ch73-40i7.2 LOC108271407 coding downstream 47343 19509033 ~ 19524997 (+)
LOC117595669 pex11g coding downstream 65356 19527046 ~ 19531687 (+)
zgc:172302 LOC108271263 coding downstream 94022 19555712 ~ 19584739 (+)
G184340 NA non-coding upstream 378333 19081252 ~ 19081485 (+)
G184309 NA non-coding upstream 447206 19012407 ~ 19012612 (+)
G184167 NA non-coding upstream 564943 18891239 ~ 18894875 (+)
G183796 NA non-coding upstream 854896 18598718 ~ 18604922 (+)
G183797 NA non-coding upstream 862578 18593698 ~ 18597240 (+)
G184503 NA non-coding downstream 134 19461824 ~ 19462843 (+)
G184614 NA non-coding downstream 86973 19548663 ~ 19602639 (+)
G184617 gamt,LOC107747770,LOC107685360,LOC107597217,LOC107757934 non-coding downstream 199402 19661092 ~ 19664491 (+)
G184718 NA non-coding downstream 241945 19703635 ~ 19704250 (+)
G184823 NA non-coding downstream 347023 19808713 ~ 19809254 (+)
adgrl4 adgrl4,LOC102783218 other upstream 189557 19254931 ~ 19270261 (+)
LOC113526284 naaladl2 other upstream 1050761 18166622 ~ 18409057 (+)
G183549 NA other upstream 1663199 17795445 ~ 17796619 (+)
ect2 ect2,LOC107674529,LOC107718889 other upstream 1678004 17754176 ~ 17781814 (+)
mcf2l2 LOC108270998,LOC108439422,LOC106613920 other upstream 1708316 17672171 ~ 17751502 (+)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other downstream 24638 19486328 ~ 19487784 (+)
LOC113546543 NA other downstream 65187 19526877 ~ 19548212 (+)
si:ch73-40i7.5 apba3,si:ch73-40i7.5,LOC108271288,LOC107750992,LOC107592849,LOC107661085,LOC105938289,LOC107096970,LOC105910839,LOC106516779,LOC107550530,LOC102779936,LOC101467998 other downstream 70391 19532081 ~ 19554969 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other downstream 233537 19695227 ~ 19700274 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other downstream 366296 19827986 ~ 19834414 (+)

Expression


Co-expression Network