G184561 (pde4c)


Basic Information

Item Value
gene id G184561
gene name pde4c
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19400044 ~ 19403214 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU218427
AGCTTAAGTTAATTTATTGACGTAGGTTCTAGAGAACAACCTGAAGTAGTCTGGAGTTTTTGGCTTTGAATGTGGAACATGAAGGTACAGAAACAGGTACAGGAGTgacaaaacattattattattattttttttttacatgaagtAACACTCTTATTCTTCAGAAAAAAGACACAATGCCATCAAACAATGAACACAACAAATAAGTTTGGCAATTTCAGGACTTGCCAGTAAAGAGAATCAAGAGGAAATGTGGCACATcagtaaagataaaaaaaaaaaagacatgaaacaACATAAAAACCACGAAAACTGTGCTTTTTAGCGGATAGATGACTTCACTGAACGGCATCATTATGGCATTGGAGTGCTCTCccattgtgcatgtgtgtgaaatctGTGCACATTTTAGTGCAGTTTGGTGGCATTGAATGGACTGCACTCGGTCAACTCATATCTGAAAGAACCACCGTGTTAGTGTTTCCTctgtttaatatattaatggAAAGAAAAGTGGgatttctgtatttactttaTGTGATGAAATACAGGAGAGaccaaaaacaccaaaacactaataatgtaattatatattataatcagtctgtttttttttaaattattgtctAGTCATCTATAGTTTATTCCAAAAATATACGGATTAAACCCTCAATGAAAACACTTAAAGTTGAAAAAATGAAGTGATGTCAATGAAGAGCAGGGAAAGATCCTGGTTTATCTCTAGCCCTTTAAATGTGCCGGAATTATTTCTGGTTCAAATtcctggagggaaaaaaaacctcaagacTCTCAGATCAAAATCACAGGCTAATATCTGGCATGTCTTAATCGAGGCAGCAAATTGTGGCAGTTTGCAAGCTGTCAATAATACGTTTGAGATAATGATGTTAAAACTGGACATTAGGTAAAACGAATACAAACGATACAAACACGAGTGGAAGTGGTGATCAGAAGGTAAGATCAGAAATGGGTACCCCTGGATATTTTACTCAGCTGTACTAGTTCATTCTATATGGGTTCAGTATACACACTCAATGAGAAACTGAAATGTATATTTGCGCATTCAGACTTGAGCGTTTAGCTTTCATGTAtttttgttattcccatGAGAAGTTTGAGGTTGTCTGCTGCTATGGCATAACAGGAGaacattgctagcacagttacagtggAGTTtaataggaggaaaaaaaatttccaatgATATCAAACATAAGGGTTAATGATCAGGTTTGACTGTTATCTCCTAAGAATAAAAGAGTAAgaacttcttttctcactcaccatttttcagtgacattcactttcatattaatgagaaatccagcgtagACATAGTGCATACAGAAGATATTGGGGACGTGTAGGACACAGTGacccaaagtgaaaatagactaaCCTGTCAGTGTTAAAACTAAAAAGCTGACTTTTATAAATCATGGATAGAAATGAAGATTGTGTGTTAGTTATAAGGATTAACATGCAAACCAAGCAGGGTGGATTTCTCATTGAAGAAAACTAGTTGTGTTAAAGAGTAAAATGAggccataaataaaaataattcaaacttCTACTTGCAAGGGAAATATTTGGAAACTTGGAAatatataaaacctttaaaatatcTTGTATTGTAAAGCTACACTTACAATCTGGATTCCTcattgctataacataagctgGTTTAAACCACTATAAAATAATTCAGATCTGAAAACCTTGCACCATGACTGGGATTTACACAAATTGCACACCATCGATATTTTcacataaaacaaatgaatgaacaaatcgATACTCTTATTATTTTTACGCTGAGTTAGAGCAAAGCAGTGCCTCTTTAACATCAGATTTAACATCTTCACAATATCAAGATCTAATCAGTTATTAATGATACATGAAGACGTGTAAAGATGTAACGGTGAATATTGAGGTGTAAGTGTGAATACCAGTGTAAATGggtgatttatttttagtggcGTATAATAAAGATGCACTGGGTAATATACAGGGGTACCTTGCTACATTAAagtgaaataattatttatatcctGAGGTTATTAGTGTCATATTTTCATCTCAAGCTAATATTTGGCACGACTGTCACTTGTTCATTCATCTGATCAAAGTGactaaaatattgaaaatacaaatgaatgctaaattaatcatttaaaagataaatgaaaCTCCTACTTGTCCAAAACTAATGGTacggtgcaaaaaaaaagttcctagACCCTGTTAGCTTAccataaatattacaatttccTCTATAGACAACATGTACATCATTTGAAGGAAGACTCTCTTTCTCAGAAGATCTCCTTGCTTTGTTAATAGACCCTGAAGAGGCCGAGCCATCCTCAGATCTCTCCTCAGTCAATGAGTGATCATTACAGCCACCTGTGTGCTAGACACAAATGCATCTTAAGAAGCTAGGACTAAAAGGCTTATCTGgcaggaaaaacaggaaatgtgtgGCTAATAGGTGAAATGAGGAGTTATCTCATTAGCTGGTGTGGGGTGCATCGCTCAGTGGGAGCCTGCTACAGCCACACTGAAGTTCATCACAGATTTAAGGAGCAAATTTTCGCTGAGACATGTCATTAGGACAGAAGTGCTTTGCACCTAGCTATGCACATTTTGTCTCTTTAGTCTCATTCTCTCACAGCCTCCTTGTCTGTTGTGTCAGGAGACAACGTCCTGCGGCACCGAGTCGTGGTGCTCTCAGGCTTGGCGTGCTGTGCTTCCTGAGGATTCTCGGAGTCTGACTCGCCCTCCTCCTCCAACGTCAGCTCGAACTGGAACTTTTCGCTTGTGGAGGCTCCAATGGCACCGTTTGAGTCCTGTTCCTCGGGCGGGGGTGAGGGACTGTGGCGGATCATGCTCTGGTACCACTCACGGTTGTCCTCCAGAGTGTCCAGGATGTCTTGGGCATCCGGGTGGACGAGGTCAGCCCATGTCTCCCAGAGAGGGTGCACGATGTAGTCAATGAAGCCCAC

Function

symbol description
pde4c Predicted to enable 3',5'-cyclic-AMP phosphodiesterase activity. Predicted to be involved in signal transduction. Located in extracellular space.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218427 True 3026 lncRNA 0.38 3 19400044 19403214
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Neighbor

gene id symbol gene type direction distance location
trnai-uau_4 NA coding downstream 83957 19316015 ~ 19316087 (-)
trnav-uac_5 NA coding downstream 84959 19315013 ~ 19315085 (-)
trnav-uac_4 NA coding downstream 86476 19313496 ~ 19313568 (-)
trnav-uac_3 NA coding downstream 87600 19312372 ~ 19312444 (-)
trnai-uau_3 NA coding downstream 87788 19312185 ~ 19312256 (-)
lsm4 lsm4 coding upstream 15470 19418684 ~ 19423950 (-)
ddx49 ddx49,LOC107757937,LOC107747066 coding upstream 20859 19424073 ~ 19429693 (-)
comp comp,LOC107733073,LOC107665851,LOC107680551,LOC107747026 coding upstream 61427 19464641 ~ 19475095 (-)
tmem38a tmem38a,LOC107730482,LOC107702305 coding upstream 73606 19476820 ~ 19483819 (-)
gamt gamt,LOC107747770,LOC107597217,LOC107685360,LOC107757934,LOC107553529 coding upstream 257851 19661065 ~ 19664681 (-)
G184463 NA non-coding downstream 86649 19305312 ~ 19313395 (-)
G184439 NA non-coding downstream 128734 19220825 ~ 19271310 (-)
LOC113526295 NA non-coding downstream 349567 19034294 ~ 19050477 (-)
G184255 NA non-coding downstream 439190 18959249 ~ 18960854 (-)
LOC113530379 NA non-coding downstream 451418 18940102 ~ 18948626 (-)
G184576 NA non-coding upstream 29509 19432723 ~ 19432927 (-)
G184577 klhl26,LOC107680559,LOC107747058 non-coding upstream 30223 19433437 ~ 19437580 (-)
G184578 NA non-coding upstream 36494 19439708 ~ 19440069 (-)
G184592 NA non-coding upstream 56632 19459846 ~ 19464541 (-)
G184598 NA non-coding upstream 84928 19488142 ~ 19488374 (-)
trnav-uac_6 NA other downstream 83670 19316119 ~ 19316374 (-)
traf5 LOC108271110,LOC108411952 other downstream 2047675 17342815 ~ 17352369 (-)
zgc:172076 LOC108271265,LOC108411951 other downstream 2057790 17245772 ~ 17342254 (-)
micos13 c10h19orf70,cunh19orf70 other downstream 3121187 16274882 ~ 16278857 (-)
G182210 NA other downstream 3707694 15690774 ~ 15692350 (-)
G184716 rps15,LOC107685215,LOC107578086 other upstream 292048 19695262 ~ 19697709 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other upstream 302868 19706082 ~ 19712597 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other upstream 779828 20183042 ~ 20192143 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other upstream 1520081 20923295 ~ 20929955 (-)
G185706 LOC108270801 other upstream 1887235 21290449 ~ 21324977 (-)

Expression

G184561(pde4c) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 15.
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G184561(pde4c) Expression in each Bioproject

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G184561(pde4c) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network