LOC113546543


Basic Information

Item Value
gene id LOC113546543
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19526877 ~ 19548212 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU218480
CTTTCTTGTCTTGCTCTCTGATAGGTAATCTATTGTTCTGGTCTGGGGAAACAATTTCCTGTTCAAAGTTCACTGTTCATCTGGTTTTGCACTGTGTACAGACTCCTGACTACATTTGTGTAAAGGTTCAACTTGATTTTCGATGAAGACCTaaggctttttttgttttttgaacatttctctgtaaaatatatactttcCACCGCGACAATAATGAGGTAATGCTAGTAAtattagttagttagctagctagctagctgtcccAGGAGCAGGCTGGTGTTTTTGCAGCTCTGTGAGCATAGAGATTAGTTATAATCATGGACAATTCATTTGAATCAGTAGTGAATTTGCTGGAGTCCTACAGAGGAAGAGATAAAGTGATAAGGACAGTATGTTATGGATCGCAGCTGGTTGGTGGCATCATTTCACAAAAGCGGCCAACTCCTCACAGCTCGGCAAGAGTCTCCTGCTCTTCTCAGCTCAGCTCAGTCACTGCCGGACAGTTCTGCGCCTGTTTGATGACCTTTCTATGGCTGC
>XM_034308909.1
ACAATTTCCTGTTCAAAGTTCACTGTTCATCTGTTTTTGCACTGTGTACAGACTCCTGACTACATTTGTGTAAAGGTTCAACTTGATTTTCGATGAAGACCTaaggctttttttgttttttgaacatttctctgtaaaatatatactttcCACCGCGACAATAATGAGGTAATGCTAGTAAtattagttagttagctagctagctagctgtcccAGGAGCAGGCTGGTGTTTTTGCAGCTCTGTGAGCATAGAGATTAGTTATAATCATGGACAATTCATTTGAATCAGTAGTGAATTTGCTGGAGTCCTACAGAGGAAGAGATAAAGTGATAAGGACAGTATGTTATGGATCGCAGCTGGTTGGTGGCATCATTTCACAAACGGCCAACTCCTCACAGCTCGGCAAGAGTCTCCTGCTCTTCTCAGCTCAGCTCAGTCACTGCCGGACAGTTCTGCGCCTGTTTGATGACCTTTCTATGGCTGCTTTTCAGCGAGCTACGGTCACCGGATCCACGGAGGAGGACAAGGTGCTGCGGTGCATGTCGGTGCTGATTAATGCTGCAGATCAGCTGTATTATCCGTGTGAACACATTGCCTGGGCAGCTGATGCAGAGCTCATTAAAGTCAAGTCTGACAAATGGTGGACACTGAGCACAGTTCTGTGGGGTGTGTCTTTACTTCTGGGCACTCTCAGATCGCTCAGAATAATCCGGAAATTAAAGAAGAAGGCAGAAATTTGGGGAGAGTTTCTTAATATTCTTAGCAGCCTGGCGGATCTGAGCAATGCTATTCATTGGATGCCACCTGGATTTCTTTGGGCTGGTCACTTCCCTGATTGGCTGGTGGGACTAATGGGGACCGCCTCGTCCCTGCTTGGCATGCTGCACATGAGTTCCAGTGATTAAAGTGCCAGCGTCTGACATGATGAACTGTGGGGAcctgaatgaatgttttttttgtttgtttgtttgtttgtttgtttgtttttgcttagAGACTACATATTTCCAATATTTCAGTTTCTTATTAGATTTTACATGGTGATGCAAGCTTCATGATTTCACATAATACACTATAAAAGGTACATGATCAGTTCTGATataatgtatacagtacataattatgtaatatataatcaAGAGACAGATTGTACAGTAAAAGAAATATAGCACTTTAGGTAAAGGATGTGCACTGAGAAAATTGatcaattacaataaaaaaaacaatactttaTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03010 Ribosome
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
TU218480 False 537 lncRNA 0.42 3 19526877 19545502
XM_034308909.1 True 1236 mRNA 0.41 6 19543469 19548212

Neighbor

gene id symbol gene type direction distance location
si:ch73-40i7.2 LOC108271407 coding upstream 1880 19509033 ~ 19524997 (+)
slc35e1 slc35e1,LOC107750991,LOC107752163 coding upstream 21776 19498363 ~ 19505101 (+)
LOC113535100 med26 coding upstream 30976 19490432 ~ 19495901 (+)
crtc1b crtc1,LOC107747695 coding upstream 68703 19442164 ~ 19458174 (+)
klhl26 klhl26,LOC107680559,LOC107747058,LOC107597147 coding upstream 87696 19429911 ~ 19439181 (+)
zgc:172302 LOC108271263 coding downstream 7500 19555712 ~ 19584739 (+)
r3hdm4 r3hdm4,LOC107750993,LOC107592851,LOC107661084 coding downstream 39116 19587328 ~ 19597392 (+)
LOC113531697 kiss1r coding downstream 51051 19599263 ~ 19605614 (+)
arid3a arid3a coding downstream 59235 19607447 ~ 19638191 (+)
ctdspl3 LOC108270532,LOC108435930,LOC107597167,LOC107757917,LOC107685268 coding downstream 94013 19642225 ~ 19648916 (+)
G184503 NA non-coding upstream 64034 19461824 ~ 19462843 (+)
G184504 NA non-coding upstream 65187 19459818 ~ 19461690 (+)
G184340 NA non-coding upstream 445392 19081252 ~ 19081485 (+)
G184309 NA non-coding upstream 514265 19012407 ~ 19012612 (+)
G184167 NA non-coding upstream 632002 18891239 ~ 18894875 (+)
G184614 NA non-coding downstream 451 19548663 ~ 19602639 (+)
G184617 gamt,LOC107747770,LOC107685360,LOC107597217,LOC107757934 non-coding downstream 112880 19661092 ~ 19664491 (+)
G184718 NA non-coding downstream 155423 19703635 ~ 19704250 (+)
G184823 NA non-coding downstream 260501 19808713 ~ 19809254 (+)
G184882 NA non-coding downstream 373259 19921471 ~ 19947483 (+)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 39093 19486328 ~ 19487784 (+)
adgrl4 adgrl4,LOC102783218 other upstream 256616 19254931 ~ 19270261 (+)
LOC113526284 naaladl2 other upstream 1117820 18166622 ~ 18409057 (+)
G183549 NA other upstream 1730258 17795445 ~ 17796619 (+)
ect2 ect2,LOC107674529,LOC107718889 other upstream 1745063 17754176 ~ 17781814 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other downstream 147015 19695227 ~ 19700274 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other downstream 279774 19827986 ~ 19834414 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other downstream 287933 19836145 ~ 19845238 (+)
ccl44 LOC108271213 other downstream 317586 19865798 ~ 19871463 (+)
G184979 NA other downstream 601759 20149971 ~ 20150894 (+)

Expression


Co-expression Network