G184614


Basic Information

Item Value
gene id G184614
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19548663 ~ 19602639 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU218491
ATTCGCTTTAGACGGTAACGTTTGGAAAAGGAGCTGGACTATGCTGAGAGTGTTGTTGGGGTTATTTAAATCTCCTCGCTTGTAATTCCGCTGTAATATCCTGGCTCCTGGTAgtggattttatttaataagtaaAGAACTAGGCGCAGACAGATAGAAACGGATTTTAAGATGAACCACGTCAACTTTGCTGTACCGGTGAAAAGTTCCAGCTCACTCGagagagagagatatatataactcttaggcaccctattttttttagtacaaactttgttaaatgttatagaaaaatgtttgtatgtcagtaaagaaagcagcagattacataagagacacttttcagataaaaaacataatgaaggctgctgggttttgccgcaaaaataagaagcgagtgtgacagtcaaagtctgaagaagaactgtggctgcttctgcaagatgctcagtaacacttacagctcatttccttataaaactgcacacattgtacctgagactattttttttttaaagcgaaggatcttcacaccaaatattgactttgtttcatttattactgtttactgctctttatagtattttttttaatgtagaaacatttaatttcattatttttgaaggcatcttt
>TU218492
ATTCGCTTTAGACGGTAACGTTTGGAAAAGGAGCTGGACTATGCTGAGAGTGTTGTTGGGGTTATTTAAATCTCCTCGCTTGTAATTCCGCTGTAATATCCTGGCTCCTGGTAgtggattttatttaataagtaaAGAACTAGGCGCAGACAGATAGAAACGGATTTTAAGATGAACCACGTCAACTTTGCTGTACCGGTGAAAAGTTCCAGCTCACTCGGAAACTTTTGCAGCAAAATGGGTGGCTTCTTAGCTGAACCGTGACGAGCGGAAAACCTTTATCTTTCTTGCCAATTGCGCTGACCAACCTGGCATGGAGAAGCAGACAGACATCACTCACAATAAGGTGGCATCATCATTTAAAGATGAGGTTGAGAACCATTCTAAACTAGAGGAACTGGATTCCTTTAACCCAATAGAGCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218491 True 633 lncRNA 0.35 3 19548663 19602639
TU218492 False 425 lncRNA 0.44 2 19548663 19550326

Neighbor

gene id symbol gene type direction distance location
LOC117595669 pex11g coding upstream 16976 19527046 ~ 19531687 (+)
si:ch73-40i7.2 LOC108271407 coding upstream 23666 19509033 ~ 19524997 (+)
slc35e1 slc35e1,LOC107750991,LOC107752163 coding upstream 43562 19498363 ~ 19505101 (+)
LOC113535100 med26 coding upstream 52762 19490432 ~ 19495901 (+)
crtc1b crtc1,LOC107747695 coding upstream 90489 19442164 ~ 19458174 (+)
arid3a arid3a coding downstream 4808 19607447 ~ 19638191 (+)
ctdspl3 LOC108270532,LOC108435930,LOC107597167,LOC107757917,LOC107685268 coding downstream 39586 19642225 ~ 19648916 (+)
ndufs7 ndufs7,LOC107680537,LOC107747413,LOC107597168,LOC107685366,LOC107553547 coding downstream 50199 19652838 ~ 19659420 (+)
dazap1 dazap1,LOC107685225 coding downstream 73577 19676216 ~ 19691780 (+)
gtpbp3 gtpbp3 coding downstream 144243 19746882 ~ 19764051 (+)
G184503 NA non-coding upstream 85820 19461824 ~ 19462843 (+)
G184504 NA non-coding upstream 86973 19459818 ~ 19461690 (+)
G184340 NA non-coding upstream 467178 19081252 ~ 19081485 (+)
G184309 NA non-coding upstream 536051 19012407 ~ 19012612 (+)
G184167 NA non-coding upstream 653788 18891239 ~ 18894875 (+)
G184617 gamt,LOC107747770,LOC107685360,LOC107597217,LOC107757934 non-coding downstream 58453 19661092 ~ 19664491 (+)
G184718 NA non-coding downstream 100996 19703635 ~ 19704250 (+)
G184823 NA non-coding downstream 206074 19808713 ~ 19809254 (+)
G184882 NA non-coding downstream 318832 19921471 ~ 19947483 (+)
G184900 ndufa11 non-coding downstream 351955 19954594 ~ 19955040 (+)
LOC113546543 NA other upstream 451 19526877 ~ 19548212 (+)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 60879 19486328 ~ 19487784 (+)
adgrl4 adgrl4,LOC102783218 other upstream 278402 19254931 ~ 19270261 (+)
LOC113526284 naaladl2 other upstream 1139606 18166622 ~ 18409057 (+)
G183549 NA other upstream 1752044 17795445 ~ 17796619 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other downstream 92588 19695227 ~ 19700274 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other downstream 225347 19827986 ~ 19834414 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other downstream 233506 19836145 ~ 19845238 (+)
ccl44 LOC108271213 other downstream 263159 19865798 ~ 19871463 (+)
G184979 NA other downstream 547332 20149971 ~ 20150894 (+)

Expression


Co-expression Network