LOC117598445


Basic Information

Item Value
gene id LOC117598445
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20266599 ~ 20294374 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU218936
acactaCTGCCACtggattggctgactggataactgcaggAATAaacaagtgtacaggtgttcctaataaactgtcACCTAGTGTATAGTGGATGTAGTAAAAAGAGTTACCAGAGAAataggacatttttttttttttttctttctagacaaaagtccttcatgACCGACACCAAAACATCTGGTTTCTCTGGAAACTCTGTGtactatgctttttttttttttttttttactacatccACTTTCTTTACTGAAGTTACTTCCTGGATTCTTCTTcagatctatatatatatttttttcttttcagtaaaGGCGCTGGGGATTGCTCAGAGAAAGGTACACATGCCCTGCAAAATGCACTCTTTCTCTAAATGCTGCGCAGAAATGCTGTACAGTAACTACATCCACAGGATCGATGGTGGTTAGACGGGTGGTTTCTACTTGGGGCACGTCGGTAGAGACAAACACGCAGATGTTTCAGATGCTTGTGAGCAAAATCATAGAGCACACTTAGCCATCTTCACTTAGTGCATGACAGAAGAAGCAACATCCCCCAATTAGTCTTTTCTCATATTTCATATACATCTTTTCCCCAAATGAGTCTTTTCTCAATGGCAGTCTTTtatcatcagatgaagatgatgtgatGAAGATGCAATGCTCAGAACTGAATGGACAAGAGAGAGTATATGTAGTGGGCGgtttatgggattttttttttttttttgtttggggaGAATCAGCAATGCTAAGCTGCATGCTGGATTGggatgtatgtgtatgtctgtatgtgtgtatgtgtgtgtgtgtgtggtgtgtgtgtggtgtgtgtgtgcccgtgtGCTGCGTGAGTGGGTGTATGCTGTGCTGTGAAGAGCCACAGTGCTAGGAGGAGCTGAAGAGCATGAGGAGCGCAAGCAACAACAGAAAGAGACACGGGGACAGGAAGTGACCGCTGTTGGTGTCATCTGTCAGAAACGGCTCCGGCGACTCGTACATACTCACTTGTAGGCTTGACATACACTCTGAGCTTCAAGCAAGGCTTTCCAGCAAGGTTTGGATGTGGAGACGCTGTGGAGAAACAGAGTGACAGATACAGATTACGGCTGAAAACGACTTCATAAACAAAAAGCTACAGTGAAAAATCCACTGTGCTCAGCTGAAAGTATACTAAAAGGCAGAGCCATTAATACTTAGTTGACAACATTGTTTACACAAGTTTAAGCAACAAGGCGAAAATCTTTACCAAACGTGC
>XR_004579121.1
AGTGACCGCTGTTGGTGTCATCTGTCAGAAACGGCTCCGGCGACTCGTACACTGAGTCATCTGTgcaggagagaggaagaaaaacagaggagagaaaaagagacaaggATGAGCAGGCCAAACAGCCGGGAGGGGATGAGTGAGCGCCAGGCACCCTAATGAGCTAGGAGAGAAAAGGAATGAGGGAACGAAGCAAAAAGAGGGGTCGCATCTGCGCCGAAGGCCGTTCTCTTATTCATGGCGCTCTCATGGCACTGGGAGCAATGCCACACACTTCAGCTTCACATGtgtACCGAGGGGAAAAGCAGAAGCCTTTGATCTGGTCTTGCTTTTTCAGAGGTTGAGGAATCCTGAAATGGCAAGTGCACTCCAATTAGCTTGggttaaatatttcagagaatATGccatttcttttcacttctcACAATATACAGCAACTCCTATCAGCTCCCTGGATGAGACTACaaggaggacacacacacacacacaaaaaaaaatgaaattagccTTACACTACTCTCAGTTCAGGCTCCATAAGAGCGCatcgctttttttttcccatggcTTTGGTGCTAGACATTGTATCTGATTCTACTTTTTACTGCATCATGattttactcaaaaaaaaaaagaccagtgCATACACTCTGCAGCTGTAAGGGCAGGGCTGCCAGGTTTCAGTGAAATTTCCAGCACAACAACatttcaaaaaccacacaaaaagacCTGCAACTAGCTTAGAAATTCAGCCATTGAGAAAAAGGGGacacatttttcctcttttcctcggTCTTTGCGTGGGAAATGAGATCATCttggtgcacacg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218936 True 1255 lncRNA 0.42 2 20266599 20271344
XR_004579121.1 False 827 lncRNA 0.46 3 20267546 20294374

Neighbor

gene id symbol gene type direction distance location
slc1a8a slc1a8a,LOC108271187,LOC108437258,LOC104955947 coding upstream 85357 20171890 ~ 20181242 (+)
LOC113530255 slc39a3,LOC106613601,LOC106573935 coding upstream 96191 20163215 ~ 20170408 (+)
sgta sgta,LOC107656077 coding upstream 103554 20153984 ~ 20163045 (+)
zgc:113223 LOC108271437,LOC108437285,LOC103041228 coding upstream 146003 20105710 ~ 20120596 (+)
apc2 apc2 coding upstream 163547 20076613 ~ 20103052 (+)
tmem259 tmem259,LOC106613615 coding downstream 253885 20548259 ~ 20563932 (+)
sid1 NA coding downstream 422157 20716531 ~ 20717902 (+)
si:ch211-1a19.2 NA coding downstream 425057 20719431 ~ 20721806 (+)
mast3b mast3 coding downstream 511957 20806331 ~ 20839589 (+)
LOC113530200 LOC108270822,LOC108438687 coding downstream 587161 20881535 ~ 20887344 (+)
G184988 NA non-coding upstream 979 20264936 ~ 20265620 (+)
G184900 ndufa11 non-coding upstream 311559 19954594 ~ 19955040 (+)
G184882 NA non-coding upstream 319116 19921471 ~ 19947483 (+)
G184823 NA non-coding upstream 457345 19808713 ~ 19809254 (+)
G184718 NA non-coding upstream 562349 19703635 ~ 19704250 (+)
G185042 NA non-coding downstream 136755 20431129 ~ 20431338 (+)
G185037 ptbp1b,LOC107753809,LOC107593132,LOC107674525,LOC107723850 non-coding downstream 141421 20435795 ~ 20436587 (+)
G185063 NA non-coding downstream 212103 20506477 ~ 20506680 (+)
G185092 NA non-coding downstream 260482 20554856 ~ 20555124 (+)
G185182 NA non-coding downstream 273702 20568076 ~ 20568292 (+)
G184979 NA other upstream 115705 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 395136 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 421361 19836145 ~ 19845238 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other upstream 432185 19827986 ~ 19834414 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other upstream 566325 19695227 ~ 19700274 (+)
wipf2a LOC108270800 other downstream 894874 21189248 ~ 21210539 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other downstream 957771 21252145 ~ 21265055 (+)
trnap-agg_1 NA other downstream 1664514 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 2018068 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 3913502 24207876 ~ 24210763 (+)

Expression


Co-expression Network