G185063


Basic Information

Item Value
gene id G185063
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20506477 ~ 20506680 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU219010
GTGAAAAGTTCCTGGAACCACAACTATTAATCCCTGGACAGGTTTATCACGAAAGATTTCACAACGCGCTCTCTCGCCAATGAAAAGGAAAGTAAGTATCACatccaccatggacaattcccaCCCCTAGACTGCTGGAAGGCAATCTCACTCACATTTTTGAATATCTTCCTTTGTTGTctgcctcacttcctgtgtttgtgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219010 True 204 lncRNA 0.44 1 20506477 20506680

Neighbor

gene id symbol gene type direction distance location
slc1a8a slc1a8a,LOC108271187,LOC108437258,LOC104955947 coding upstream 325235 20171890 ~ 20181242 (+)
LOC113530255 slc39a3,LOC106613601,LOC106573935 coding upstream 336069 20163215 ~ 20170408 (+)
sgta sgta,LOC107656077 coding upstream 343432 20153984 ~ 20163045 (+)
zgc:113223 LOC108271437,LOC108437285,LOC103041228 coding upstream 385881 20105710 ~ 20120596 (+)
apc2 apc2 coding upstream 403425 20076613 ~ 20103052 (+)
tmem259 tmem259,LOC106613615 coding downstream 41579 20548259 ~ 20563932 (+)
sid1 NA coding downstream 209851 20716531 ~ 20717902 (+)
si:ch211-1a19.2 NA coding downstream 212751 20719431 ~ 20721806 (+)
mast3b mast3 coding downstream 299651 20806331 ~ 20839589 (+)
LOC113530200 LOC108270822,LOC108438687 coding downstream 374855 20881535 ~ 20887344 (+)
G185037 ptbp1b,LOC107753809,LOC107593132,LOC107674525,LOC107723850 non-coding upstream 69890 20435795 ~ 20436587 (+)
G185042 NA non-coding upstream 75139 20431129 ~ 20431338 (+)
G184987 NA non-coding upstream 185573 20265708 ~ 20320904 (+)
LOC117598445 NA non-coding upstream 212103 20266599 ~ 20294374 (+)
G184988 NA non-coding upstream 240857 20264936 ~ 20265620 (+)
G185092 NA non-coding downstream 48176 20554856 ~ 20555124 (+)
G185182 NA non-coding downstream 61396 20568076 ~ 20568292 (+)
G185206 NA non-coding downstream 199314 20705994 ~ 20708027 (+)
G185330 LOC101478692 non-coding downstream 383567 20890247 ~ 20896461 (+)
G185381 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065 non-coding downstream 457855 20964535 ~ 20967901 (+)
G184979 NA other upstream 355583 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 635014 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 661239 19836145 ~ 19845238 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other upstream 672063 19827986 ~ 19834414 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other upstream 806203 19695227 ~ 19700274 (+)
wipf2a LOC108270800 other downstream 682568 21189248 ~ 21210539 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other downstream 745465 21252145 ~ 21265055 (+)
trnap-agg_1 NA other downstream 1452208 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 1805762 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 3701196 24207876 ~ 24210763 (+)

Expression


Co-expression Network