G185381 (bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065)


Basic Information

Item Value
gene id G185381
gene name bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20964535 ~ 20967901 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU219404
GCCCAACCAAATCCACACAATGCTCTTTATGCAGCAATAAAGATCACAACACTAAAAGGTTTTGATATTTATTGTTTCGTtgacaaaaataattaagaCTAGTTTTCCATCAATCATGATCAAGACTGACAATACGGTATTCATTCAGAACCATAAGTCATATTGTAATGTTACCATCATCTTGTTTAAGTGCAAGAGACTGGTTGCGGAGCATTATCTGGGCAAGAGTGccaatttaaaatacaaaagtcTCTGGGTTGCTGGATAGTGTTGATATGTCTGTTATATCACTTAAAAATACTGCAACAGGTTCTGTCCTGAATTGCAGTCCCAGTTAATGATGTGCAATCAGTTAGCCTCATTCTTCGATGCTTCGTCGAAGTTCTCTACCAGATCTGGGACATCATCATCCTCTTCATCGATATCTTCTGCTTTTGGGGCTTTGTTGTCAAGAACTTGTCTGGGGAACTGCTCCGCAAGTTTGCGCAGACTCGTGAGACTGTCTGCACCCAGTTGACTGAGGATGCCGGGAAGCATCTCTGTCAGCTGCTTGGTCTCTGCATGGCCTGTGATGGCGAATGTGTTTGCAGACAAAGATGCCTGCACTTTGGGGTTATTGAAGTGGATCACTGTCCCATCATCCTTTATCATGTTCACCTCCTCAATGCCAGCAATGTTATTCACAGCGAGTTTCTTTAACGAGCTCTGAAGTTTTTTGTCGTCCGCTGTTGCCGTTCTGTGGACGACCTTCTTCTTCCTACGTGCTGTTCCCTTGCCCCCTATTCGGACCTGGGCTTGAAGCTTGGCCAGTTTTTCTTGGTTCATATTGTCttcttTTACCTACAGCTGGTCAGAAAAGCATGCGACAAAAGAAGAAGGCGGAAATGACGATACCACTACgtcacttttattttatgtgctCGTGCGTACAATGGGGTTGTATTAAAGCGCTGCTGCCTCTGCTG

Function

symbol description
btf3l4 Orthologous to human BTF3L4 (basic transcription factor 3 like 4).

NR:

description
PREDICTED: SH3 domain-containing protein 19-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219404 True 965 lncRNA 0.44 6 20964535 20967901

Neighbor

gene id symbol gene type direction distance location
elovl1b LOC108270818,LOC108438650,LOC107656106,LOC107753833,LOC107665848,LOC107562086,LOC107723066 coding upstream 16744 20932742 ~ 20947791 (+)
LOC113530200 LOC108270822,LOC108438687 coding upstream 77191 20881535 ~ 20887344 (+)
mast3b mast3 coding upstream 124946 20806331 ~ 20839589 (+)
si:ch211-1a19.2 NA coding upstream 242729 20719431 ~ 20721806 (+)
sid1 NA coding upstream 246633 20716531 ~ 20717902 (+)
chrna4b chrna4,LOC105906770,LOC103467111,LOC106941279 coding downstream 834 20968735 ~ 20989421 (+)
hcn5 LOC108270784,LOC103027332,LOC107658208,LOC107712254,LOC107724451,LOC107668864,LOC107569239,LOC107597416 coding downstream 61493 21029394 ~ 21036574 (+)
txlng txlng,LOC107723067,LOC107665847 coding downstream 75399 21043300 ~ 21050473 (+)
zrsr2 zrsr2,LOC107729896,LOC107602790,LOC107753840 coding downstream 95516 21063417 ~ 21070097 (+)
npepps npepps,LOC106587691,LOC107718863,LOC107674532 coding downstream 119016 21086917 ~ 21105876 (+)
G185330 LOC101478692 non-coding upstream 68074 20890247 ~ 20896461 (+)
G185206 NA non-coding upstream 256508 20705994 ~ 20708027 (+)
G185182 NA non-coding upstream 396243 20568076 ~ 20568292 (+)
G185092 NA non-coding upstream 409411 20554856 ~ 20555124 (+)
G185063 NA non-coding upstream 457855 20506477 ~ 20506680 (+)
G185418 NA non-coding downstream 34927 21002828 ~ 21024560 (+)
G185436 rbbp7,LOC105893332,LOC103023991 non-coding downstream 91163 21059064 ~ 21060228 (+)
G185439 NA non-coding downstream 109274 21077175 ~ 21339714 (+)
LOC113528706 NA non-coding downstream 269403 21237304 ~ 21248130 (+)
G185500 NA non-coding downstream 422450 21390351 ~ 21390568 (+)
G184979 NA other upstream 813641 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 1093072 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 1119297 19836145 ~ 19845238 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other upstream 1130121 19827986 ~ 19834414 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other upstream 1264261 19695227 ~ 19700274 (+)
wipf2a LOC108270800 other downstream 221347 21189248 ~ 21210539 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other downstream 284244 21252145 ~ 21265055 (+)
trnap-agg_1 NA other downstream 990987 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 1344541 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 3239975 24207876 ~ 24210763 (+)

Expression


Co-expression Network