G185439


Basic Information

Item Value
gene id G185439
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21077175 ~ 21339714 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU219480
CCGCTCTGCACTGCTCTCGCCGGGCGCGGTGGCGCGTGCCTGTAATCCAAGCTACCGGGAGGCTGAGGCTGGCGGATCGTTTGAGCTCAGGGGTTCTGGGCTGCAGTGGCCTATGCCGATCGGGTGTCCGCACTAAGTTCGGTATCGATATGGTGCTCCGGAGGGAGCTCGGGACCACCAGGTCGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGGAACGGAGCAGGTCAAAGCCCCCGTGCCGATCAGTAGTGGGATCGCGCCTGTGAATAGACACTGCAGTGCAGCCTGAGCAATACAGCGGGACTCAGTCTTTTACACTCACCCCTCAAGCAGCAGcttctacacacacagcagcaccacAACATACTGTCCTCTCACAACGCACTGCTTCACTCACTGCTCCTAAATGCACCAGTGTTACACTCAACAGCACACCTACACCTCAACCTCATCAACACGCTTTACCTTCACTCACCATAAACATCACCCCACAATCACCCCCAAACATCTC
>TU219481
CCGCTCTGCACTGCTCTCGCCGGGCGCGGTGGCGCGTGCCTGTAATCCAAGCTACCGGGAGGCTGAGGCTGGCGGATCGTTTGAGCTCAGGGGTTCTGGGCTGCAGTGGCCTATGCCGATCGGGTGTCCGCACTAAGTTCGGTATCGATATGGTGCTCCGGAGGGAGCTCGGGACCACCAGGTCGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGGAACGGAGCAGGTCAAAGCCCCCGTGCCGATCAGTAGTGGGATCGCGCCTGTGAATAGACACTGCAGTGCAGCCTGAGCAATACAGCGGGACTCAGTCTTTTACACTCACCCCTCAAGCAGCAGcttctacacacacagcagcaccacAACATACTGTCCTCTCACAACGCACTGCTTCACTCACTGCTCCTAAATGCACCAGTGTTACACTCAACAGCACACCTACACCTCAACCTCATCAACACGCTTTACCTTCACTCACCATAAACATCACCCCACAATCACCCCCAAACATCTC
>TU219482
CCGCTCTGCACTGCTCTCGCCGGGCGCGGTGGCGCGTGCCTGTAATCCAAGCTACCGGGAGGCTGAGGCTGGCGGATCGTTTGAGCTCAGGGGTTCTGGGCTGCAGTGGCCTATGCCGATCGGGTGTCCGCACTAAGTTCGGTATCGATATGGTGCTCCGGAGGGAGCTCGGGACCACCAGGTCGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGGAACGGAGCAGGTCAAAGCCCCCGTGCCGATCAGTAGTGGGATCGCGCCTGTGAATAGACACTGCAGTGCAGACTGAGTCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGCCCAGAACCCCTGAGCTCAAACGATCCGCCAGCCTCAGCCTCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGCCCAGAACCCCTGAGCTCAAACGATCCGCCAGCCTCAGCCTCCCGGTAGCTTGGATTACAGGCACGCGCCACCGCGCCCGGCGAGAG
>TU219483
aagCTGCTGCTTGAGGGGTGAGTGTAAAAGACTGAGTCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGCCCAGAACCCCTGAGCTCAAACGATCCGCCAGCCTCAGCCTCCCGGTAGCTTGGATTACAGGCACGCGCCACCGCGCCCGGCGAGAG
>TU219484
aagCTGCTGCTTGAGGGGTGAGTGTAAAAGACTGAGTCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGCCCAGAACCCCTGAGCTCAAACGATCCGCCAGCCTCAGCCTCCCGGTAGCTTGGATTACAGGCACGCGCCACCGCGCCCGGCGAGAGACTGAGTCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGCCCAGAACCCCTGAGCTCAAACGATCCGCCAGCCTCAGCCTCCCGGTAGCTTGGATTACAGGCACGCTCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGCCCAGAACCCCTGAGCTCAAACGATCCGCCAGCCTCAGCCTCCCGGTAGCTTGGATTACAGGCACGCGCCACCGCGCCCGGCGAGAG
>TU219485
aagCTGCTGCTTGAGGGGTGAGTGTAAAAGACTGAGTCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGCCCAGAACCCCTGAGCTCAAACGATCCGCCAGCCTCAGCCTCCCGTCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGCCCAGAACCCCTGAGCTCAAACGATCCGCCAGCCTCAGCCTCCCGGTAGCTTGGATTACAGGCACGCGCCACCGCGCCCGGCGAGAG
>TU219486
GAATTCTCCAGGTGGCGCGTGCCTGTAATCCAAGCTACCGGGAGGCTGAGGCTGGCGGATCGTTTGAGCTCAGGGGTTCTGGGCTGCAGTGGCCTATGCCGATCGGGTGTCCGCACTAAGTTCGGTATCGATATGGTGCTCCGGAGGGAGCTCGGGACCACCAGGTCGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGGAACGGAGCAGGTCAAAGCCCCCGTGCCGATCAGTAGTGGGATCGCGCCTGTGAATAGACACTGCAGTGCAGCCTGAGCAATACAGCGGGACTCAGTCTTTTACACTCACCCCTCAAGCAGCAGcttctacacacacagcagcaccacAACATACTGTCCTCTCACAACGCACTGCTTCACTCACTGCTCCTAAATGCACCAGTGTTACACTCAACAGCACACCTACACCTCAACCTCATCAACACGCTTTACCTTCACTCACCATAAACATCACCCCACAATCACCCCCAAACATCTC
>TU219488
aagCTGCTGCTTGAGGGGTGAGTGTAAAAGACTGAGTCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGCCCAGAACCCCTGAGCTCAAACGATCCGCCAGCCTCAGCCTCCCGGTAGCTTGGATTACAGGCACGCCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGCCCAGAACCCCTGAGCTCAAACGATCCGCCAGCCTCAGCCTCCCGGTAGCTTGGATTACAGGCACGCGCCACCGCGCCCGGCGAGAG
>TU219490
AGGCGAGAGATGAGATGTTTGGGGGTGATTGTGGGGTGATGTTTATGGTGAGTGAAGGTAAAGCGTGTTGATGAGGTTGAGGTGTAGGTGTGCTGTTGAGTGTAACACTGGTGCATTTAGGAGCAGTGAGTGAAGCAGTGCGTTGTGAGAGGACAGTATGTTGTggtgctgggtgtgtgtgtagaagctgCTGCTTGAGGGGTGAGTGTAAAAGACTGAGTCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGCCCAGAACCCCTGAGCTCAAACGATCCGCCAGCCTCAGCCTCCCGGTAGCTTGGATTACAGGCACGCGCCACCGCGCCCGGCGAGAGACTGAGTCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGCCCAGAACCCCTGAGCTCAAACGATCCGCCAGCCTCAGCCTCCCGGTATCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGCCCAGAACCCCTGAGCTCAAACGATCCGCCAGCCTCAGCCTCCCGGTAGCTTGGATTACAGGCACGCGCCACCGCGCCCGGCGAGAG
>TU219491
CCGCTCTGCACTGCTCTCGCCGGGCGCGGTGGCGCGTGCCTGTAATCCAAGCTACCGGGAGGCTGAGGCTGGCGGATCGTTTGAGCTCAGGGGTTCTGGGCTGCAGTGGCCTATGCCGATCGGGTGTCCGCACTAAGTTCGGTATCGATATGGTGCTCCGGAGGGAGCTCGGGACCACCAGGTCGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGGAACGGAGCAGGGCCGGGCGCGGTGGCGCGTGCCTGTAATCCAAGCTACCGGGAGGCTGAGGCTGGCGGATCGTTTGAGCTCAGGGGTTCTGGGCTGCAGTGGCCTATGCCGATCGGGTGTCCGCACTAAGTTCGGTATCGATATGGTGCTCCGGAGGGAGCTCGGGACCACCAGGTCGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGGAACGGAGCAGGTCAAAGCCCCCGTGCCGATCAGTAGTGGGATCGCGCCTGTGAATAGACACTGCAGTGCAGCCTGAGCAATACAGCGGGACTCAGTCTTTTACACTCACCCCTCAAGCAGCAGcttctacacacacagcagcaccacAACATACTGTCCTCTCACAACGCACTGCTTCACTCACTGCTCCTAAATGCACCAGTGTTACACTCAACAGCACACCTACACCTCAACCTCATCAACACGCTTTACCTTCACTCACCATAAACATCACCCCACAATCACCCCCAAACATCTC
>TU219492
CCGCTCTGCACTGCTCTCGCCGGGCGCGGTGGCGCGTGCCTGTAATCCAAGCTACCGGGAGGCTGAGGCTGGCGGATCGTTTGAGCTCAGGGGTTCTGGGCTGCAGTGGCCTATGCCGATCGGGTGTCCGCACTAAGTTCGGTATCGATATGGTGCTCCGGAGGGAGCTCGGGACCACCAGGTCGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGGAACGGAGCAGGTCAAAGCCCCCGTGCCGATCAGTAGTGGGATCGCGCCTGTGAATAGACACTGCAGTGCAGACTGAGTCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGCCCAGAACCCCTGAGCTCAAACGATCCGCCAGCCTCAGCCTCCCGGTAGCTTGGATTACAGGCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGCCCAGAACCCCTGAGCTCAAACGATCCGCCAGCCTCAGCCTCCCGGTAGCTTGGATTACAGGCACGCGCCACCGCGCCCGGCGAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219480 False 514 lncRNA 0.58 2 21078672 21084699
TU219481 False 514 lncRNA 0.58 2 21078672 21084699
TU219482 False 1097 lncRNA 0.63 5 21078672 21339714
TU219483 False 594 lncRNA 0.62 3 21327437 21339714
TU219484 False 1077 lncRNA 0.63 4 21327437 21339714
TU219485 False 815 lncRNA 0.62 4 21327437 21339714
TU219486 False 497 lncRNA 0.57 3 21077175 21084699
TU219488 False 777 lncRNA 0.62 3 21327437 21339714
TU219490 False 1066 lncRNA 0.61 4 21327254 21339714
TU219491 False 723 lncRNA 0.60 2 21078672 21084699
TU219492 True 1117 lncRNA 0.63 5 21078672 21339714

Neighbor

gene id symbol gene type direction distance location
zrsr2 zrsr2,LOC107729896,LOC107602790,LOC107753840 coding upstream 7078 21063417 ~ 21070097 (+)
txlng txlng,LOC107723067,LOC107665847 coding upstream 26702 21043300 ~ 21050473 (+)
hcn5 LOC108270784,LOC103027332,LOC107658208,LOC107712254,LOC107724451,LOC107668864,LOC107569239,LOC107597416 coding upstream 40601 21029394 ~ 21036574 (+)
chrna4b chrna4,LOC105906770,LOC103467111,LOC106941279 coding upstream 87754 20968735 ~ 20989421 (+)
elovl1b LOC108270818,LOC108438650,LOC107656106,LOC107753833,LOC107665848,LOC107562086,LOC107723066 coding upstream 129384 20932742 ~ 20947791 (+)
c11h6orf120 c10h6orf120,LOC103038725,LOC105905813 coding downstream 229 21339943 ~ 21344414 (+)
mrpl4 mrpl4,LOC107680457,LOC107753863,LOC107597183,LOC107680460 coding downstream 6503 21346217 ~ 21351331 (+)
col9a1a LOC108438673,LOC108270765,LOC107753862,LOC107680514,LOC107597184 coding downstream 19760 21359474 ~ 21373371 (+)
lgsn lgsn coding downstream 44159 21383873 ~ 21390206 (+)
psmd14 psmd14,psde,LOC107563735 coding downstream 192967 21532681 ~ 21552267 (+)
G185436 rbbp7,LOC105893332,LOC103023991 non-coding upstream 16947 21059064 ~ 21060228 (+)
G185418 NA non-coding upstream 52615 21002828 ~ 21024560 (+)
G185381 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065 non-coding upstream 109274 20964535 ~ 20967901 (+)
G185330 LOC101478692 non-coding upstream 180714 20890247 ~ 20896461 (+)
G185206 NA non-coding upstream 369148 20705994 ~ 20708027 (+)
G185500 NA non-coding downstream 50637 21390351 ~ 21390568 (+)
G185501 LOC108270736,LOC105903432 non-coding downstream 51130 21390844 ~ 21391810 (+)
G185502 NA non-coding downstream 55648 21395362 ~ 21404052 (+)
G185503 NA non-coding downstream 67765 21407479 ~ 21409792 (+)
G185519 NA non-coding downstream 104670 21444384 ~ 21446480 (+)
G184979 NA other upstream 926281 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 1205712 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 1231937 19836145 ~ 19845238 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other upstream 1242761 19827986 ~ 19834414 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other upstream 1376901 19695227 ~ 19700274 (+)
trnap-agg_1 NA other downstream 619174 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 972728 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 2868162 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 3223686 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 4192031 25531745 ~ 25696872 (+)

Expression


Co-expression Network