G185533


Basic Information

Item Value
gene id G185533
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21466332 ~ 21466938 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU219609
Gtttgatgctccagaaggaaaaaacatgcattaagagctggggggtgaaaacttttgaacagaatggagatgtgtacatttttcttattttgcctaaatatcatattttttcatttagtactgcccttcagaggctacagaagatagttacatgtttcccagaagacaaaataagttaaatttaccctgatcttcaaattcaaaaagttttctggagcatctgtgagcgtttgaaccttctgtaatagttgcatatgagtccctcagttgtcctcagtgtgaaaagatggatctcaaaatcatacagttattgttggaaagggttcaaatacacaaaaaatgctggaaaaccaaagaatttgtgggacctgaaggatttttctgaagaacagcaggcagtttaactgttcaggacaaacaagagactcatgaactactatcagtaaacaaaaaaacacagctgtggatcattcaggtaacaacacagtaagtaagtaagtaatttttataaattcaattattattttctcttgcggactatatgtaaacatcttttatgtgaaataaactaataaacaataaataaacaataacccgcattttgtat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219609 True 607 lncRNA 0.33 1 21466332 21466938

Neighbor

gene id symbol gene type direction distance location
lgsn lgsn coding upstream 76126 21383873 ~ 21390206 (+)
col9a1a LOC108438673,LOC108270765,LOC107753862,LOC107680514,LOC107597184 coding upstream 92961 21359474 ~ 21373371 (+)
mrpl4 mrpl4,LOC107680457,LOC107753863,LOC107597183,LOC107680460 coding upstream 115001 21346217 ~ 21351331 (+)
c11h6orf120 c10h6orf120,LOC103038725,LOC105905813 coding upstream 121918 21339943 ~ 21344414 (+)
krt94 LOC108270801,LOC108438672,LOC103031381,LOC102787562,LOC102307626 coding upstream 142063 21321091 ~ 21324269 (+)
psmd14 psmd14,psde,LOC107563735 coding downstream 65743 21532681 ~ 21552267 (+)
tbr1a LOC108270775 coding downstream 87763 21554701 ~ 21559002 (+)
slc4a10a LOC108270744,LOC108412979,LOC107674536 coding downstream 94117 21561055 ~ 21605914 (+)
si:ch211-227n13.3 LOC108270813 coding downstream 144838 21611776 ~ 21615292 (+)
nxph2b LOC108270824 coding downstream 149251 21616189 ~ 21622277 (+)
G185519 NA non-coding upstream 19852 21444384 ~ 21446480 (+)
G185503 NA non-coding upstream 56540 21407479 ~ 21409792 (+)
G185502 NA non-coding upstream 62280 21395362 ~ 21404052 (+)
G185501 LOC108270736,LOC105903432 non-coding upstream 74522 21390844 ~ 21391810 (+)
G185500 NA non-coding upstream 75764 21390351 ~ 21390568 (+)
G185546 NA non-coding downstream 21386 21488324 ~ 21488527 (+)
G185751 NA non-coding downstream 93229 21560167 ~ 21560379 (+)
G185940 NA non-coding downstream 553910 22020848 ~ 22021059 (+)
G185997 NA non-coding downstream 914460 22381398 ~ 22381611 (+)
G186046 NA non-coding downstream 961920 22428858 ~ 22429104 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 201277 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 255793 21189248 ~ 21210539 (+)
G184979 NA other upstream 1315438 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 1594869 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 1621094 19836145 ~ 19845238 (+)
trnap-agg_1 NA other downstream 491950 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 845504 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 2740938 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 3096462 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 4064807 25531745 ~ 25696872 (+)

Expression


Co-expression Network