G185546


Basic Information

Item Value
gene id G185546
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21488324 ~ 21488527 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU219622
CGCAAAGACTGCCGGAGTGATGCAAACAGATTGACCGACTGATCtcatacattattttacatactGAGTGTGTCTAAGACTAAGACAACAAAAATACGTAACAGGAAAAGAAATATAACGTGTGAATCATAACGCTACCAGATTGCTCATATAACGAGACTCTTTAAtttctcctctcttcctccatctcgtcttttcctttcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219622 True 204 lncRNA 0.39 1 21488324 21488527

Neighbor

gene id symbol gene type direction distance location
lgsn lgsn coding upstream 98118 21383873 ~ 21390206 (+)
col9a1a LOC108438673,LOC108270765,LOC107753862,LOC107680514,LOC107597184 coding upstream 114953 21359474 ~ 21373371 (+)
mrpl4 mrpl4,LOC107680457,LOC107753863,LOC107597183,LOC107680460 coding upstream 136993 21346217 ~ 21351331 (+)
c11h6orf120 c10h6orf120,LOC103038725,LOC105905813 coding upstream 143910 21339943 ~ 21344414 (+)
krt94 LOC108270801,LOC108438672,LOC103031381,LOC102787562,LOC102307626 coding upstream 164055 21321091 ~ 21324269 (+)
psmd14 psmd14,psde,LOC107563735 coding downstream 44154 21532681 ~ 21552267 (+)
tbr1a LOC108270775 coding downstream 66174 21554701 ~ 21559002 (+)
slc4a10a LOC108270744,LOC108412979,LOC107674536 coding downstream 72528 21561055 ~ 21605914 (+)
si:ch211-227n13.3 LOC108270813 coding downstream 123249 21611776 ~ 21615292 (+)
nxph2b LOC108270824 coding downstream 127662 21616189 ~ 21622277 (+)
G185533 NA non-coding upstream 21386 21466332 ~ 21466938 (+)
G185519 NA non-coding upstream 41844 21444384 ~ 21446480 (+)
G185503 NA non-coding upstream 78532 21407479 ~ 21409792 (+)
G185502 NA non-coding upstream 84272 21395362 ~ 21404052 (+)
G185501 LOC108270736,LOC105903432 non-coding upstream 96514 21390844 ~ 21391810 (+)
G185751 NA non-coding downstream 71640 21560167 ~ 21560379 (+)
G185940 NA non-coding downstream 532321 22020848 ~ 22021059 (+)
G185997 NA non-coding downstream 892871 22381398 ~ 22381611 (+)
G186046 NA non-coding downstream 940331 22428858 ~ 22429104 (+)
G186060 NA non-coding downstream 1066922 22555449 ~ 22899731 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 223269 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 277785 21189248 ~ 21210539 (+)
G184979 NA other upstream 1337430 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 1616861 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 1643086 19836145 ~ 19845238 (+)
trnap-agg_1 NA other downstream 470361 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 823915 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 2719349 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 3074873 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 4043218 25531745 ~ 25696872 (+)

Expression


Co-expression Network