G185997


Basic Information

Item Value
gene id G185997
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 22381398 ~ 22381611 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU220165
GCACGAGGCAGCTTGATGGTTGGGCGAGCAGGCTTCGAAGTGTACCGAAAGCACTTTTTGAGCACAGCCCAGCTCCTTCAGGCTTGGAGCCAGGCAGCCTTTGGGCAGCTTTTCAGCGCTTCACTCAAATGACAGATGagcaactttatttaaatatcctCGTCGATTCATGAATACGGTGTCTAGCAAACACAACATTTCGGTTCCAAATGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220165 True 214 lncRNA 0.49 1 22381398 22381611

Neighbor

gene id symbol gene type direction distance location
lims1 lims1,LOC107687747,LOC107715819,LOC107572539,LOC104918652,LOC108270729 coding upstream 611312 21756590 ~ 21770086 (+)
nxph2b LOC108270824 coding upstream 759121 21616189 ~ 21622277 (+)
si:ch211-227n13.3 LOC108270813 coding upstream 766106 21611776 ~ 21615292 (+)
slc4a10a LOC108270744,LOC108412979,LOC107674536 coding upstream 775484 21561055 ~ 21605914 (+)
tbr1a LOC108270775 coding upstream 822396 21554701 ~ 21559002 (+)
fam43a fam43a,LOC106573864 coding downstream 751356 23132967 ~ 23135152 (+)
LOC117598438 NA coding downstream 788272 23169883 ~ 23170911 (+)
ddx59 ddx59,LOC107717990,LOC107593348 coding downstream 997070 23378681 ~ 23387676 (+)
kif14 kif14 coding downstream 1007459 23389070 ~ 23410114 (+)
LOC113526144 LOC108270555 coding downstream 1031418 23413029 ~ 23473569 (+)
G185940 NA non-coding upstream 360339 22020848 ~ 22021059 (+)
G185751 NA non-coding upstream 821019 21560167 ~ 21560379 (+)
G185546 NA non-coding upstream 892871 21488324 ~ 21488527 (+)
G185533 NA non-coding upstream 914460 21466332 ~ 21466938 (+)
G185519 NA non-coding upstream 934918 21444384 ~ 21446480 (+)
G186046 NA non-coding downstream 47247 22428858 ~ 22429104 (+)
G186060 NA non-coding downstream 173838 22555449 ~ 22899731 (+)
G186058 NA non-coding downstream 508673 22890284 ~ 22942348 (+)
G186301 NA non-coding downstream 517625 22899236 ~ 22903794 (+)
G186325 NA non-coding downstream 572282 22953893 ~ 22954101 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 378 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 422439 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 1116343 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 1170859 21189248 ~ 21210539 (+)
G184979 NA other upstream 2230504 20149971 ~ 20150894 (+)
glrx2 glrx2 other downstream 1826265 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 2181789 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 3150134 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 3804251 26185862 ~ 26212115 (+)
G188164 NA other downstream 3825331 26206942 ~ 26210010 (+)

Expression


Co-expression Network