G186058


Basic Information

Item Value
gene id G186058
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 22890284 ~ 22942348 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU220229
ctgatgttggtgaggaggtctggggttcagtcggtgttccagttcatcccaaaggtgttcagtggggttgaggtcaggcactgatgttggtgaggaggtctggggttcagtcggtgttccagttcatcccaaaggtgttcagtggggttgaggtcagggctctgtgcaggacactcgagttcttccactccaaccttcacacaccatgtcttcatggagctcgctttgtgcacaggggcatcgtcatgctggaacaggtttcagcctcttagttccagtgaagggaaattgtaatgctacagcacacagtcattccatacaattgtgtgcttccaactttgtggcaatagtttggggaaaaaaccacatacgagtgtgatgggcaggtgtccatatacttctGGTGATATAGCGTAGGTCTGTACTATGTGCGTTAAGAAAAAATCTTACAGTTTAACTTTCACCTTGCCAGGGTAAAATATTTACCCCTGTGAAAAGTGagatcagtgttttattctgttatttgatttaaaatgcaaagaaaatctATTATGTAACTTGATCTGATGTGCCTTATACCATCTTATAGATCATAAGAAAACcgatttaattaattaattttcattgtTATACCCCAAACATCAATAAAGATCAAACTGAACACATTAATCAAATTTTTGTTATTAACTAAACCATTTCTCCTCATTTTAATAGCTGAATGATTAATAAGCACTCCAGATAGCagtcttgctgttttttttttttttgctggttaCCATCCACGTGTGGGTTTCCAAGTGCCTACAACCTTTCCTTTGGAATGGACAATGTAGACTGGATGCATCATAGCTGTAGCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220229 True 859 lncRNA 0.41 2 22890284 22942348

Neighbor

gene id symbol gene type direction distance location
lims1 lims1,LOC107687747,LOC107715819,LOC107572539,LOC104918652,LOC108270729 coding upstream 1120198 21756590 ~ 21770086 (+)
nxph2b LOC108270824 coding upstream 1268007 21616189 ~ 21622277 (+)
si:ch211-227n13.3 LOC108270813 coding upstream 1274992 21611776 ~ 21615292 (+)
slc4a10a LOC108270744,LOC108412979,LOC107674536 coding upstream 1284370 21561055 ~ 21605914 (+)
tbr1a LOC108270775 coding upstream 1331282 21554701 ~ 21559002 (+)
fam43a fam43a,LOC106573864 coding downstream 190619 23132967 ~ 23135152 (+)
LOC117598438 NA coding downstream 227535 23169883 ~ 23170911 (+)
ddx59 ddx59,LOC107717990,LOC107593348 coding downstream 436333 23378681 ~ 23387676 (+)
kif14 kif14 coding downstream 446722 23389070 ~ 23410114 (+)
LOC113526144 LOC108270555 coding downstream 470681 23413029 ~ 23473569 (+)
G186046 NA non-coding upstream 461180 22428858 ~ 22429104 (+)
G185997 NA non-coding upstream 508673 22381398 ~ 22381611 (+)
G185940 NA non-coding upstream 869225 22020848 ~ 22021059 (+)
G185751 NA non-coding upstream 1329905 21560167 ~ 21560379 (+)
G185546 NA non-coding upstream 1401757 21488324 ~ 21488527 (+)
G186325 NA non-coding downstream 11545 22953893 ~ 22954101 (+)
G186304 col6a2 non-coding downstream 13948 22956296 ~ 22958386 (+)
G186331 NA non-coding downstream 61221 23003569 ~ 23006029 (+)
G186435 NA non-coding downstream 176412 23118760 ~ 23119777 (+)
G186538 NA non-coding downstream 392998 23335346 ~ 23352236 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 509264 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 931325 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 1625229 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 1679745 21189248 ~ 21210539 (+)
G184979 NA other upstream 2739390 20149971 ~ 20150894 (+)
glrx2 glrx2 other downstream 1265528 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 1621052 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 2589397 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 3243514 26185862 ~ 26212115 (+)
G188164 NA other downstream 3264594 26206942 ~ 26210010 (+)

Expression


Co-expression Network