G186304 (col6a2)


Basic Information

Item Value
gene id G186304
gene name col6a2
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 22956296 ~ 22958386 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU220483
AGGAGATTTTATTTGTTGGTTATGGGTGCTTGACAACTTTTGACACTTTCTTATAGATGATTATCTATGATAACATTCCATGTGTACATATATAGTTTATTATGGTAGTAAGCAATTTCTAGACTGAGAGACAAAACCCATTTTTcaagaaatattataaaaaaaaaaataaaaaaaaatattataaaaaagcAACAGGAGCAGCTTGGCAGTATTAAATTCAGCATTAAATTCAATAAGTTGTGAGCTAAGACTATCAATTCTTCAGGCTATGTTTAGTTTGCTATATAACCATATTTATATGCTTTTTATGTTTGCtcttttctgtgcatgttctccctgtTTTACCACAACCTGATTTATTGTACTAACACTGAAGTGACACTTCAAGTGTCTACAGAATGTTAAAATATTGATTTCATCTTCATGGAATTAGAAAATTTAGTGACTACATCTAATTAGACTGTCTGTAAAAGACTCAAAAACTTATCAATTGTGATCATTCTGTTTATAACTAAGTACATGAACATACctttaataaacaattaatatgAAAGTTTAACTTGAAACGCATTGCCATTTCTTAAACATGTATCCAAGCAGGAGTGCACTCTGATTAATTGCAGAATATTTTTGTCTGTGACTCATAGAAGAAGCTGTTGTGTGACTGGTTCCCTGTGTTAAGTAAGTAAAACCATGATGACAAACTTGGTACTTGTTGATTTGTATCATGAAATCTGACATGAAACCTGACTAGGACTGACACTGAGATAAAATGAGTATTTATCAAAATGATTTCATTGAACCCTAACTGGTTTCTGCTGATATGTAACATCTCATGGAAACGTCTTGCCTAGACATACAGGAAAAACTCCAGTCTTGCTCTAGTTTAGCACCTTAGTGTGTATACAAAACAATTCCGGTAATTCagttaaaaatacagaaatttaccaaaaaaatcaacaatggCAACTTGTAGTTTAAACATTCAGTCAGTAATTTTAAGTGTTTGGCATTTAACTTTACTGTAGTGTCTTCTTGTTCCCTTCTCCCAAATCCACTGGTACAATATGGAGTGAGCATGATAATGACGGAACAACCCACAGATATTTTTCTATTGAACTTCAAAAGTCCGTcagttgaaaaaagaaaatctaatttaataagATCGTAAATGAAAGATACGTCCTGCAAATTCAGATAATGACCCTAATGACCAAGCTGACTCCAATAACACACCAATTCCCCCCTTACATTAGTGTGAACTTAAGTCACCCCATCTCCCTCAGCAGATCCATCGAAAGAAACGATCAAAGAAGCTGGGTTTGGACAGTTGGGAGTAATCCTTTCCCCTGAAAATAGCTGTCTGGTCTCCCAGAGTGAGCTTTGTCAGCACTTCCTTGTCAACTTCTTCATCCTTGCCCATGGCGATCACAGTAGGCACAGCCTCTGCCCGGCGCATGGAGCTTATGCCTTCCTCCAGATTCTTCTTGTCGGTGATTCCATCAGTGATAAAGATAAAGGAGATTTCAGCATTGCTACGAACCAAGCGGGTGTTTCCACTCTGCAGGATGTTATTGACGGCATACATAATGGCACTGCCTACGTTCGAAGACGCATCCATGTACTTCATGTTTGCGAGGCCATCAGAGATGATGGTGAGATTGTGTGAAAGTCTGAAGACCACCTCCTGACGGTTTTCATCGCCATACTGTAGCAGAGCTACACGGGCATTATTTTTGTCCCTGGCATTCTGAGCCAAGACCAGCTGGTGAGCCACTTTATCCACAAACTCACGGACCCTCTGAAAGTTATCCAAGCCCATGCGTTCAGAACCATCCAGCAAGAACACAAGATCAACAGGGCGCTGAGCGCAATTGGCCACTGCTGGC

Function

symbol description
col6a2 Acts upstream of or within axonogenesis; muscle cell development; and muscle organ development. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in several structures, including anterior segment eye; gut; integument; musculature system; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Ullrich congenital muscular dystrophy. Orthologous to human COL6A2 (collagen type VI alpha 2 chain).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220483 True 1892 lncRNA 0.38 2 22956296 22958386

Neighbor

gene id symbol gene type direction distance location
lims1 lims1,LOC107687747,LOC107715819,LOC107572539,LOC104918652,LOC108270729 coding upstream 1186210 21756590 ~ 21770086 (+)
nxph2b LOC108270824 coding upstream 1334019 21616189 ~ 21622277 (+)
si:ch211-227n13.3 LOC108270813 coding upstream 1341004 21611776 ~ 21615292 (+)
slc4a10a LOC108270744,LOC108412979,LOC107674536 coding upstream 1350382 21561055 ~ 21605914 (+)
tbr1a LOC108270775 coding upstream 1397294 21554701 ~ 21559002 (+)
fam43a fam43a,LOC106573864 coding downstream 174581 23132967 ~ 23135152 (+)
LOC117598438 NA coding downstream 211497 23169883 ~ 23170911 (+)
ddx59 ddx59,LOC107717990,LOC107593348 coding downstream 420295 23378681 ~ 23387676 (+)
kif14 kif14 coding downstream 430684 23389070 ~ 23410114 (+)
LOC113526144 LOC108270555 coding downstream 454643 23413029 ~ 23473569 (+)
G186325 NA non-coding upstream 2195 22953893 ~ 22954101 (+)
G186058 NA non-coding upstream 13948 22890284 ~ 22942348 (+)
G186301 NA non-coding upstream 52502 22899236 ~ 22903794 (+)
G186060 NA non-coding upstream 56565 22555449 ~ 22899731 (+)
G186046 NA non-coding upstream 527192 22428858 ~ 22429104 (+)
G186331 NA non-coding downstream 45183 23003569 ~ 23006029 (+)
G186435 NA non-coding downstream 160374 23118760 ~ 23119777 (+)
G186538 NA non-coding downstream 376960 23335346 ~ 23352236 (+)
G186643 NA non-coding downstream 447118 23405504 ~ 23419593 (+)
G186699 NA non-coding downstream 517729 23476115 ~ 23476497 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 575276 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 997337 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 1691241 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 1745757 21189248 ~ 21210539 (+)
G184979 NA other upstream 2805402 20149971 ~ 20150894 (+)
glrx2 glrx2 other downstream 1249490 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 1605014 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 2573359 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 3227476 26185862 ~ 26212115 (+)
G188164 NA other downstream 3248556 26206942 ~ 26210010 (+)

Expression


Co-expression Network