G186798


Basic Information

Item Value
gene id G186798
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 23669018 ~ 23676568 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU221099
aaaatgtacaataacctggttgcataagtttgcacacccttaaactGATAATTTGTTGAAgcagcttttgattttattacaccactctgtCTTTTTGGGTAAGGGTCTAACAgcttggcacatcttgacttttTGTGACTCTTTCGTGGAAAAATATTCTGTGCACAGTCCTCTTCAGGTCACCCACAGATTTTTCAATTGGATTTAGATTGATCTTGTTCCTTTGTTTATTTGGATGTGACATTCCTTCTCATCTTTGGCTTTCTGGCAGATGCCTGAAGGTTCTGTACCAAAATCAACTGGTGTTTGGAGCTATCcctgattccctccaccttgatttTAGCCTTCGTCCCAGCTGAAGCAAAgtagccccaaagcatgatgctgccaccaccacgcttcaccgtgggtatggtgttcctGTACTGATGTGCTGTAGtctttttgcaccaaacatacctttcgGAATTACAGCCAAAAAGTTCTACTGTGGTCTCATCAGACCGTAACACAtcttgccacatggtttgggtgattgtatgtatgttttagCAACATGTCTATGCTTTGGCTTCTGTCTTGCTACCCTAatccatagcccagacatgtacAGAATATGAGAGGTTGCTGTAACGTGATAaacagtacttgccagatatttctGCGGCTCTTTTCTGGTGCTGTTTTCTCCTTGTCTTCTCATTAATTTTTGAGGGCCATCCTGATCTTGGTAATGTTACTCATgccatattttctccacttgttgatgatggccttcacagtatTCTATTGTACATCGAATGCCTTGGAAATTCTACTGTATGCCTCTCCTGgtcgatacctttcaacaatgagatcccaTTCTTGCTTTGTAAGCTTTTTGTGGACCCAGACCTTTGCACTAGCATGCAACCCAGaggatgtcaagaaaatcccaCAGGAACAACtttatttgtggttaattagaGTCACACTGATTGATGGCAGGTGTATATTAACTAATACTTAACATGACTTTGAATGTGATTCCCAATTATCACATTCCCAGCCAcattcccaattataaaagggtgtgcacacttgtgcagacaggttattgtaaaaaaaaaattcttcttttcctctaaaatat
>TU221100
AAACAATATTATGATCACAACTGGAAGAACTTTTACTTTGGAATTGATGGGTACTTACACTCTGGTTTTGTCACTGTGGAgtaaaaacaatgacaaaattatggtatttatatttagatgaaATATAAAGGTAAATAATAAGCaggtcaggtgtgtgtatgaactAAGCAGCTGTGTGATCCAGCATTGTCTTGTTACCTGTTGTTGTGGTGGACATGAGTGAGGGTGAGGCTGTGATGGAGGAGGCAGTGCGTGAGGAGTCAGAGATGCTTGCGTTTAAGGTTGCTGCAAATTATCAACATTGTCAGTAGGTTGTGAATTACAGCAAAGCTGCTAATAGTACAATCTCCATGATACAAATAATAGGATTAGTTACTATAATACTCTTAAAGCAAAGTTATATATGATTCAGGgtgtagaataaaaaaaaaaaaacactttttctcAAAGTCTCAGGTAAGCCTTTTATCCAAAATGGCATATTTTAGTAAACATAATATACATTTCTGACTGGTTGGTCCTGTTGGGACATGGGCTGTGATGTCTGTGTTGAGAAACAGCTGTGTGGAGAATCTCGTAAAAGCTGTTATCAATAATATGTGATAACCGTTGTTGTGGTTAtgcttgaatgtgtgtgttgatgcttGGGGGTGCTTGTGGGCAAGCCTGCTGTGTTAATTTCTTTTACTAGAACATGTATAATACATGAGTATAACAACAGACATGTAATATAGCATGTaccaaatgtgtgtatgtatctataGTCAAGCCATAACCAGTTATCACATAACTTCATTCACATCATTACCCAAAGTAAGAAGATATTACCTGTACTAGACAAAGTTGTGGTTGATTGGTGTTGAAGGTTGGTTATGCATGGGGGAGAGCCTGATGTGTTAATAATGTCTGCTGCTAGAATAAGCATAATATATGAGCATATCAACATgaacagtggatataaaatgtcgAAACAATCCTGTTAAAATGGAaagtttttgtgaagtaaaacaAAACTGAGATAATTCATGTCAGATCCTTTTCCACCTTCAGTGTGAAATTGCGacctataaaaataaagtgaaatacaaTCATAAagattttaggggaaaaaaacgaaaactaaaaaatgtacaataacctggttgcataagtttgcacacccttaaactGATAATTTGTTGAAgcagcttttgattttattacaccactctgtCTTTTTGGGTAAGGGTCTAACAgcttggcacatcttgacttttTGTGACTCTTTCGCGGAAAAATATTCTGTGCACAGTCCTCTTCAGGTCACCCACAGATTTTTCAATTGGATTTAGATTGATCTTGTTCCTTTGTTTATTTGGATGTGACATTCCTTCTCATCTTTGGCTTTCTGGCAGATGCCTGAAGGTTCTGTACCAAAATCAACTGGTGTTTGGAGCTATCcctgattccctccaccttgatttTAGCCTTCGTCCCAGCTGAAGCAAAgtagccccaaagcatgatgctgccaccaccacgcttcaccgtgggtatggtgttcctGTACTGATGTGCTGTAGtctttttgcaccaaacatacctttcgGAATTACAGCCAAAAAGTTCTACTGTGGTCTCATCAGACCGTAACACAtcttgccacatggtttgggtgattgtatgtatgttttagCAACATGTCTATGCTTTGGCTTCTGTCTTGCTACCCTAatccatagcccagacatgtacAGAATATGAGAGGTTGCTGTAACGTGATAaacagtacttgccagatatttctGCGGCTCTTTTCTGGTGCTGTTTTCTCCTTGTCTTCTCATTAATTTTTGAGGGCCATCCTGATCTTGGTAATGTTACTCATgccatattttctccacttgttgatgatggccttcacagtatTCTATTGTACATCGAATGCCTTGGAAATTCTACTGTATGCCTCTCCTGgtcgatacctttcaacaatgagatcccaTTCTTGCTTTGTAAGCTTTTTGTGGACCCAGACCTTTGCACTAGCATGCAACCCAGaggatgtcaagaaaatcccaCAGGAACAACtttatttgtggttaattagaGTCACACTGATTGATGGCAGGTGTATATTAACTAATACTTAACATGACTTTGAATGTGATTCCCAATTATCACATTCCCAGCCAcattcccaattataaaagggtgtgcacacttgtgcagacaggttattgtaaaaaaaaaattcttcttttcctctaaaatat

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221099 False 1132 lncRNA 0.41 2 23671984 23676568
TU221100 True 2255 lncRNA 0.38 4 23669018 23676568

Neighbor

gene id symbol gene type direction distance location
LOC113526144 LOC108270555 coding upstream 195449 23413029 ~ 23473569 (+)
kif14 kif14 coding upstream 258904 23389070 ~ 23410114 (+)
ddx59 ddx59,LOC107717990,LOC107593348 coding upstream 281342 23378681 ~ 23387676 (+)
LOC117598438 NA coding upstream 498107 23169883 ~ 23170911 (+)
fam43a fam43a,LOC106573864 coding upstream 533866 23132967 ~ 23135152 (+)
dennd1b dennd1b coding downstream 159135 23835703 ~ 23926144 (+)
trnaq-uug_2 NA coding downstream 256298 23932866 ~ 23932937 (+)
trnaq-cug_11 NA coding downstream 257564 23934132 ~ 23934203 (+)
trnaq-uug_3 NA coding downstream 258067 23934635 ~ 23934706 (+)
trnaq-uug_4 NA coding downstream 260449 23937017 ~ 23937088 (+)
G186699 NA non-coding upstream 192521 23476115 ~ 23476497 (+)
G186643 NA non-coding upstream 249425 23405504 ~ 23419593 (+)
G186538 NA non-coding upstream 316782 23335346 ~ 23352236 (+)
G186435 NA non-coding upstream 549241 23118760 ~ 23119777 (+)
G186331 NA non-coding upstream 662989 23003569 ~ 23006029 (+)
G186814 NA non-coding downstream 35465 23712033 ~ 23714371 (+)
G186864 NA non-coding downstream 115352 23791920 ~ 23792127 (+)
G186868 NA non-coding downstream 119162 23795730 ~ 23800962 (+)
G186882 NA non-coding downstream 150108 23826676 ~ 23827902 (+)
G186949 NA non-coding downstream 476547 24153115 ~ 24203702 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 1287998 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 1710059 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 2403963 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 2458479 21189248 ~ 21210539 (+)
G184979 NA other upstream 3518124 20149971 ~ 20150894 (+)
glrx2 glrx2 other downstream 531308 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 886832 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 1855177 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 2509294 26185862 ~ 26212115 (+)
G188164 NA other downstream 2530374 26206942 ~ 26210010 (+)

Expression


Co-expression Network