G186868


Basic Information

Item Value
gene id G186868
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 23795730 ~ 23800962 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU221186
atttaatgggAAATAGTTTCTATacaccatcttttttttttttttttttttcaagaaacaAGGAAACAATGGACAATCTTGATAGAACACGTACCATACTATTAACACGAAGATCAATATATAAGATTCTCGGATTTACCGACTATATTTGAAAGAGTGCACAACTGCTTTCTAGGCCATCGCTTGCCTCCTTTGTAACAGAATTACACCATTAAAAAGATCCTCAGATGAAAAACAGAACAGTACAAAACTAGTGAGGCGTTCAAAGAATGCGATATccattaaacaaacacacatgtatcTCCTGAATTTCACAAGCTCTCTTCCAGGTTATAGCGTAAGGCACATAGTAGAACTGAGTTAGGCGTCTACTTCATGAAGTAGATCTTAGAGGAGCACTTTGTTCTACAAACAGAACCAACTCTCCATCACACAATGAACTAATCAACCCCTTAACTGTCCCTCGCTGTCACTTCCAGCCAAATTTCCTGTCGTGTTTTTGGTCTGTTCAGTGGCAAGTgtccataaaattaaaaaaaactaaaaaaataacaaatttgaatttgactgaggaggaaaaaaaagtgactttttattatatatatatatatgactaaCTATCTCCAATCGTAAGTGGTGTTTGTTTCGTCTGTTCTGTAAACCACAAGCTCAGAAGTTATacatttctaaaagaaaaaaatgacagtctAGATTTTCCATCTCCGAATGTATTGAATCTCATGATCACCCTGAGCTGCACCACCGTAACACACTTATCAAACACTAAGCAAACTGCAAATCTATAGCAATTAATAGGAATTGGCATACCAAAAGTTGAAATACTCTATACGCCAAAATACTTGTTAAAAGTGCCTTATCTGTACAATCAATTAAAATGTAGCccgtttaaaaaaatgatataaaggGCTCTTGAGCTTTTTTTGAACAGTTACCACTGCACAGTTGTCGATATTGTTTAACCCTAATTAGAGCCACACTGGTATGATGCTATCTTGAGGTTGAAGCACCACCTGGCATGCGAGTTGTGAagtataaagtgtaaaaaaaaaacggcaaTGGACTCGTTTGTCAAAGCTACTTTCACTGGATAAAACTGGaatgcaaaatgtttttggaaataaaatgcAGATTATCAAtgaaatctaaatttaaaaaataataaaatacaaaacagaatgaaggattTTCTGCGTGGCTTAAAGCACGTCGTCTAAGACATGTTTCCACTTTCACGTATGAAGTGTTAAAACATGCCGACACTATGCTGACATGGTGAAaacggtaaaaaaaaatggaaaaaaaaaatggacgcACGTGTAAACTCAGCTGCCAAGTGGTTGCAAGTGCTACACATTAAGTTGACCCTCTCATTTGTTTTAGTACTTTCTGTGGGAATGGGACTGTCACTGGTTGATTTGCAAATGAAATCTGTCAAATTTGTAAAGTaatagaaaaacaaagcaaaaaaaatagtAAGGTTTACAGAGTTGTAGCTAATTAAATTATAGCTGATTTGAATGGGTTTGTCTAaaaagtgtaaacaaacaaacaaaaaaaatcaaatgtaaatgtaatcaaaatgtcgaagtcgtttttttttttttttttttttttttgtttttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221186 True 1644 lncRNA 0.34 2 23795730 23800962

Neighbor

gene id symbol gene type direction distance location
LOC113526144 LOC108270555 coding upstream 322161 23413029 ~ 23473569 (+)
kif14 kif14 coding upstream 385616 23389070 ~ 23410114 (+)
ddx59 ddx59,LOC107717990,LOC107593348 coding upstream 408054 23378681 ~ 23387676 (+)
LOC117598438 NA coding upstream 624819 23169883 ~ 23170911 (+)
fam43a fam43a,LOC106573864 coding upstream 660578 23132967 ~ 23135152 (+)
dennd1b dennd1b coding downstream 34741 23835703 ~ 23926144 (+)
trnaq-uug_2 NA coding downstream 131904 23932866 ~ 23932937 (+)
trnaq-cug_11 NA coding downstream 133170 23934132 ~ 23934203 (+)
trnaq-uug_3 NA coding downstream 133673 23934635 ~ 23934706 (+)
trnaq-uug_4 NA coding downstream 136055 23937017 ~ 23937088 (+)
G186864 NA non-coding upstream 3603 23791920 ~ 23792127 (+)
G186814 NA non-coding upstream 81359 23712033 ~ 23714371 (+)
G186798 NA non-coding upstream 119162 23669018 ~ 23676568 (+)
G186699 NA non-coding upstream 319233 23476115 ~ 23476497 (+)
G186643 NA non-coding upstream 376137 23405504 ~ 23419593 (+)
G186882 NA non-coding downstream 25714 23826676 ~ 23827902 (+)
G186949 NA non-coding downstream 352153 24153115 ~ 24203702 (+)
G186951 NA non-coding downstream 354818 24155780 ~ 24162236 (+)
G186976 NA non-coding downstream 360306 24161268 ~ 24186454 (+)
G186977 NA non-coding downstream 361327 24162289 ~ 24173634 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 1414710 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 1836771 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 2530675 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 2585191 21189248 ~ 21210539 (+)
G184979 NA other upstream 3644836 20149971 ~ 20150894 (+)
glrx2 glrx2 other downstream 406914 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 762438 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 1730783 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 2384900 26185862 ~ 26212115 (+)
G188164 NA other downstream 2405980 26206942 ~ 26210010 (+)

Expression


Co-expression Network