G186949


Basic Information

Item Value
gene id G186949
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 24153115 ~ 24203702 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU221282
gtaaggagacttgagcaaccccatccccaccctgatatcttttatagctcccacagaagaagaaagagcagagtaccataaaaaataaaaaaaaaaaaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaaaaaaaaaaaaaaac
>TU221283
taaatacaaactatagcccattgcttaaacactgaccaactgagtgagtggatgggtgggtgatagctatctctataagtgattgggaactagtaatttggctgagggtaaggagacttgagcaaccccatccccaccctgatatcttttatagctcccacagaagaagaaagagcagagtaccatatagtacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaaaaaaaaaaaaaaac
>TU221284
CTGacccccaacctgataggttaggttggttagggttaggaataggaatagggttaggcacaatcgcatccccaccctgacatcttttatagctcccacagaagaaaaaagagcacagtcccatatagtacttaaaaaaaaggaacggatgtactttgtaaatgtttcagctgtgcttagtgagaaaggagggagaataacagatttaaacacaaactatagcccatagcttaaacactgaccgactgagtgagtgtgtggatgggtggaggatggctatctctacaagtgattgggaactagtaatctggcggAGGGTAAggagacttgagcaaccccatccccaccctgatatcttttatagctcccacagaagaagaaagagcaaAGTACCAtatagcacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaacagatgtactttgtaaatgtttcagctgtgcttagtgagaaaggagggagaataacagatttaaagaCAAACTAgagcccatagcttaaacacggaccgactgagtgagtgtgtggatgggtggaggatggctatctctataagtgattgggaactagtaatctggctcagggtaaggtgatgtgagcaaccccatccccaccctgatatcttttatagctcccacagaagaagaaagagcagagtaccatatagtacttaaaaaaaaaaaaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221282 False 241 lncRNA 0.17 4 24156602 24203702
TU221283 False 313 lncRNA 0.27 3 24157122 24203702
TU221284 True 722 lncRNA 0.41 3 24153115 24203702

Neighbor

gene id symbol gene type direction distance location
b3galt2 LOC108270796,LOC108438755,LOC103041183 coding upstream 14474 24117818 ~ 24138641 (+)
aspm aspm,LOC104953288,LOC107578396 coding upstream 149323 23978873 ~ 24003792 (+)
trnaq-uug_6 NA coding upstream 206052 23946992 ~ 23947063 (+)
trnaq-uug_5 NA coding upstream 214227 23938817 ~ 23938888 (+)
trnaq-cug_12 NA coding upstream 214735 23938309 ~ 23938380 (+)
uchl5 uchl5 coding downstream 8968 24212670 ~ 24229367 (+)
ccdc50 ccdc50,si:ch73-6k16.1,LOC108438764 coding downstream 36125 24239827 ~ 24263752 (+)
p3h2 p3h2,LOC107560692 coding downstream 71627 24275329 ~ 24319098 (+)
LOC113547074 NA coding downstream 119463 24323165 ~ 24332670 (+)
onecut3a LOC108270794 coding downstream 134518 24338220 ~ 24381314 (+)
G186882 NA non-coding upstream 325213 23826676 ~ 23827902 (+)
G186868 NA non-coding upstream 352153 23795730 ~ 23800962 (+)
G186864 NA non-coding upstream 360988 23791920 ~ 23792127 (+)
G186814 NA non-coding upstream 438744 23712033 ~ 23714371 (+)
G186798 NA non-coding upstream 476547 23669018 ~ 23676568 (+)
G187257 NA non-coding downstream 307970 24511672 ~ 24512168 (+)
G187258 NA non-coding downstream 321982 24525684 ~ 24552314 (+)
G187265 LOC108270831 non-coding downstream 371313 24575015 ~ 24576233 (+)
G187268 NA non-coding downstream 385624 24589326 ~ 24589703 (+)
G187286 fkbp8 non-coding downstream 439057 24642759 ~ 24646662 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 1772095 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 2194156 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 2888060 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 2942576 21189248 ~ 21210539 (+)
G184979 NA other upstream 4002221 20149971 ~ 20150894 (+)
glrx2 glrx2 other downstream 4174 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 359698 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 1328043 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 1982160 26185862 ~ 26212115 (+)
G188164 NA other downstream 2003240 26206942 ~ 26210010 (+)

Expression


Co-expression Network