G186951


Basic Information

Item Value
gene id G186951
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 24155780 ~ 24162236 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU221288
aaaagagcacagtcccatatagtacttaaaaaaaaggaacagatgtaatttgtaaaaatttcagctgtgcttagtgagaaaggagggagaataacagatttaaatacaaactatagcccatagcttaaacacggaccgactgagtgagtgtgtggatgggtggaggatggctatctctataagtgattgggaactagtaatctggctcagggtaaggtgatgtgagcaaccccacccccaaccccacccccaacctgataggttaggttggttagggttaggaatag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221288 True 287 lncRNA 0.43 3 24155780 24162236

Neighbor

gene id symbol gene type direction distance location
b3galt2 LOC108270796,LOC108438755,LOC103041183 coding upstream 17139 24117818 ~ 24138641 (+)
aspm aspm,LOC104953288,LOC107578396 coding upstream 151988 23978873 ~ 24003792 (+)
trnaq-uug_6 NA coding upstream 208717 23946992 ~ 23947063 (+)
trnaq-uug_5 NA coding upstream 216892 23938817 ~ 23938888 (+)
trnaq-cug_12 NA coding upstream 217400 23938309 ~ 23938380 (+)
uchl5 uchl5 coding downstream 50434 24212670 ~ 24229367 (+)
ccdc50 ccdc50,si:ch73-6k16.1,LOC108438764 coding downstream 77591 24239827 ~ 24263752 (+)
p3h2 p3h2,LOC107560692 coding downstream 113093 24275329 ~ 24319098 (+)
LOC113547074 NA coding downstream 160929 24323165 ~ 24332670 (+)
onecut3a LOC108270794 coding downstream 175984 24338220 ~ 24381314 (+)
G186882 NA non-coding upstream 327878 23826676 ~ 23827902 (+)
G186868 NA non-coding upstream 354818 23795730 ~ 23800962 (+)
G186864 NA non-coding upstream 363653 23791920 ~ 23792127 (+)
G186814 NA non-coding upstream 441409 23712033 ~ 23714371 (+)
G186798 NA non-coding upstream 479212 23669018 ~ 23676568 (+)
G186977 NA non-coding downstream 53 24162289 ~ 24173634 (+)
G186950 NA non-coding downstream 31105 24193341 ~ 24202566 (+)
G187257 NA non-coding downstream 349436 24511672 ~ 24512168 (+)
G187258 NA non-coding downstream 363448 24525684 ~ 24552314 (+)
G187265 LOC108270831 non-coding downstream 412779 24575015 ~ 24576233 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 1774760 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 2196821 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 2890725 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 2945241 21189248 ~ 21210539 (+)
G184979 NA other upstream 4004886 20149971 ~ 20150894 (+)
glrx2 glrx2 other downstream 45640 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 401164 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 1369509 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 2023626 26185862 ~ 26212115 (+)
G188164 NA other downstream 2044706 26206942 ~ 26210010 (+)

Expression


Co-expression Network