G187268


Basic Information

Item Value
gene id G187268
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 24589326 ~ 24589703 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU221662
GTCCCAGTCCTGAACATTAAAAAAGCACGCTTTGGGttttagcattaacattaaaactTATTTTCAAAAGCCTCCCCTGTTTTGTTAAAACAGCAGCATATTTTATCTTACACTACCCTATACAACATGTCATTTGGCATATTTGAAGCTAATTTTgttgacagcataactaaagcaaaataaaatagtgAAATTAAGACCAATTGAAGATTGAGGTTAGTCCTAAACTAATGCAATGTTGTAACAGTGTTATTGTTTGTAGCTTGCACCAATTAGCTTTAGCACCAATTAACTCTATGtccaggaggaaaaaaaatcctggagGTTTGTAGACACAAGTTTCTATTAAAATGTAGTTTAATTTAGAAAGGGTCTAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221662 True 378 lncRNA 0.33 1 24589326 24589703

Neighbor

gene id symbol gene type direction distance location
amh amh coding upstream 31332 24554661 ~ 24557994 (+)
dot1l dot1l coding upstream 41119 24520342 ~ 24548207 (+)
LOC113547073 LOC108270825 coding upstream 118461 24461882 ~ 24470865 (+)
onecut3a LOC108270794 coding upstream 208012 24338220 ~ 24381314 (+)
LOC113547074 NA coding upstream 256656 24323165 ~ 24332670 (+)
rrp36 NA coding downstream 59324 24649027 ~ 24653190 (+)
tmem59l tmem59l,LOC108439280,LOC107586396,LOC108262047 coding downstream 67201 24656904 ~ 24668500 (+)
ankrd24 LOC108270748,LOC107586440 coding downstream 94906 24684609 ~ 24704908 (+)
LOC113547059 egln1 coding downstream 153408 24743111 ~ 24765317 (+)
vps13c vps13c coding downstream 220126 24809829 ~ 24913123 (+)
G187265 LOC108270831 non-coding upstream 13093 24575015 ~ 24576233 (+)
G187258 NA non-coding upstream 37012 24525684 ~ 24552314 (+)
G187257 NA non-coding upstream 77158 24511672 ~ 24512168 (+)
G186950 NA non-coding upstream 386760 24193341 ~ 24202566 (+)
G186976 NA non-coding upstream 402872 24161268 ~ 24186454 (+)
G187286 fkbp8 non-coding downstream 53056 24642759 ~ 24646662 (+)
G187294 NA non-coding downstream 116464 24706167 ~ 24707504 (+)
G187309 NA non-coding downstream 146906 24736609 ~ 24737071 (+)
G187316 katnb1 non-coding downstream 184062 24773765 ~ 24774186 (+)
G187276 NA non-coding downstream 214068 24803771 ~ 24806565 (+)
oaz1a oaz1 other upstream 20683 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 378563 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 2208306 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 2630367 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 3324271 21252145 ~ 21265055 (+)
LOC113523924 nell1 other downstream 942042 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 1596159 26185862 ~ 26212115 (+)
G188164 NA other downstream 1617239 26206942 ~ 26210010 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 1670827 26260530 ~ 26352035 (+)

Expression


Co-expression Network