G187276


Basic Information

Item Value
gene id G187276
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 24803771 ~ 24806565 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU221673
TCAGAGATCTACTTTCCTGCAGAGTGTGGCTTTGACAAACACACCTGAGCTTGCTAATCAATAGCCAAAATAGAGTAGTTTGACACTTGTCATGGAAAGTATTTTGTTTTGACAAAATTCTATGGTGCATTACCAGCAAAAGCAAGCCAAAGGCAAAGACAAACCAGTGTATACTTACCCATGTCCAAAAGGAGGTGTCACAGAAAATTAGATTTACAGTTGTGTACACAGTCTGAAgtatgaaagaaatgaaacttGTGAGGCAAAGCTAATTTGATGATCAAGTAATAAACTCAAAAGCACATCAGAGATGTCTTACATTGGCTCCTATAATGACTCTGGTGTAGAATTTCAGAGTAGCCTTGTTCTCCTCATGGATTTGCTTCTTGCCTTTGGTTCCAACCTTTCCTTTAGGCCATTTCATTCACTCCCTAGTTCCAGGACTGCTTTATTTCCGCGGGAGAATAGTCGTTGCTTTCGTGCATTTACAActgacaaatattttaaaatcaatattttacGACCTCAATGAGATCATATAATGAAGTACTTCATGCAAAAGTTACAcatcagcaaaaacaaaatgcttttcCGGCGCATGGAATCTACGTAGCTGTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221673 True 620 lncRNA 0.38 2 24803771 24806565

Neighbor

gene id symbol gene type direction distance location
LOC113547059 egln1 coding upstream 38454 24743111 ~ 24765317 (+)
ankrd24 LOC108270748,LOC107586440 coding upstream 98863 24684609 ~ 24704908 (+)
tmem59l tmem59l,LOC108439280,LOC107586396,LOC108262047 coding upstream 135271 24656904 ~ 24668500 (+)
rrp36 NA coding upstream 150581 24649027 ~ 24653190 (+)
amh amh coding upstream 245777 24554661 ~ 24557994 (+)
vps13c vps13c coding downstream 3264 24809829 ~ 24913123 (+)
rcn1 rcn1,LOC107690795,LOC107719795,LOC107728085,LOC107662342 coding downstream 109051 24915616 ~ 24930743 (+)
zdhhc13 LOC108270773 coding downstream 143849 24950414 ~ 24984205 (+)
immp1l immp1l,LOC107719794,LOC107594745 coding downstream 351840 25158405 ~ 25170812 (+)
e2f8 e2f8 coding downstream 381728 25188293 ~ 25199986 (+)
G187316 katnb1 non-coding upstream 29585 24773765 ~ 24774186 (+)
G187309 NA non-coding upstream 66700 24736609 ~ 24737071 (+)
G187294 NA non-coding upstream 96267 24706167 ~ 24707504 (+)
G187286 fkbp8 non-coding upstream 157109 24642759 ~ 24646662 (+)
G187268 NA non-coding upstream 214068 24589326 ~ 24589703 (+)
G187340 NA non-coding downstream 125080 24931645 ~ 24932046 (+)
G187527 NA non-coding downstream 181314 24987879 ~ 24988093 (+)
G187563 NA non-coding downstream 314682 25121247 ~ 25122115 (+)
G187612 NA non-coding downstream 369243 25175808 ~ 25176089 (+)
G187668 NA non-coding downstream 465711 25272276 ~ 25272599 (+)
oaz1a oaz1 other upstream 235128 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 593008 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 2422751 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 2844812 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 3538716 21252145 ~ 21265055 (+)
LOC113523924 nell1 other downstream 725180 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 1379297 26185862 ~ 26212115 (+)
G188164 NA other downstream 1400377 26206942 ~ 26210010 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 1453965 26260530 ~ 26352035 (+)

Expression


Co-expression Network