G187294


Basic Information

Item Value
gene id G187294
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 24706167 ~ 24707504 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU221707
CAAACAATCATTCTGAGCAAAGAACAAAGTCAGcctgaacatacacacatatttagcacaaaaaaaaaaaaaatcattcctgATTGCCTTCAAATTTAGGTAACAGATTGCTTCTTATTCTTACTGTAAGTTTGTTCTGTTGCTTTTGCTTCAAGGTTTCAAGAGCTATGCCAAGGACAGTGAGCAAAATAAACTGAAAGCTTGCACTTATGATGGTCGTAACGTAGGTTGTAACTATTTGTGATAAACAATGCACTGTAGGTAAATGGAAAAGGAAAGTTATCTAGGgcctttaatattatttttgtttatatgtaatttaatttcttttcacttcatttcatttcacatcaTTGCCCTttcaaaaaaatgacaaattttgaAGAGGGCAAACACGTagtttaaatactttaaactaTTAATATGAACATATTTATGGGTAATTGAGTCCCTTCTAAGAATTTCTTTAACATTCTTTAATTTCTAAATCTATGAGTTCAAGGAACCAtttgttgtaaagaaataaacattaaaaaatcagCACTGCAACACTGCATCCtgagaaaaaaatcttacaCCAACATTTTTTAACACAGCTAAAAACTTGCGCCTTTTTGGTATAATTTAACACCAGCACTGTGTGTTTCCCACATATAATAATGTCCAATAAAAGTTTACTATCTAAGTTTAAGGCAAAGGTGTAGGGACCCAGGGTTGGCTGCACAAAATGATGCCTAGCTTCATTTACCTGAGAATAATAACAGGATTCATACTAatttacactcactcactttcagtaaccgctatatcctggtcaggattgcagtggatccggagcctatcccgggaacaccaggcatgaggtgggaatacaccctggatgggacgccagtccatcacagtgcaCCATCTGCACACTCGTTCGCACCCTCAATAAAACCTGGGAGCAATTTTACTAATTTACAGTGTTTCATTAAAGGATGGAATGTCTGttattaatacaatacaatctAATTGTACCACTGCTTATGTGAAGATAGGTGTGTGCAAGTGTTGTCTTTTAATCTTGACACACTTACACTTGTTTGATTGGTGGTCACTGCTTTCTGTACACCACCTGCTGGAGATGAAGTTCGCTCTCAGCTGCTACAATGGGCAGCTTGTTGCTCAGGTGATAGTTGATCAGGTGACTGATGCTCTCAAACAGCATGTCTTTAGTGCGTACCTGACAAttacaatgaaaacaaaataagaatcTCAATCTCTTCTCATTAAAAATAGTTACTATTTTATTGTACAATAATCTCTGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221707 True 1312 lncRNA 0.36 2 24706167 24707504

Neighbor

gene id symbol gene type direction distance location
ankrd24 LOC108270748,LOC107586440 coding upstream 1259 24684609 ~ 24704908 (+)
tmem59l tmem59l,LOC108439280,LOC107586396,LOC108262047 coding upstream 37667 24656904 ~ 24668500 (+)
rrp36 NA coding upstream 52977 24649027 ~ 24653190 (+)
amh amh coding upstream 148173 24554661 ~ 24557994 (+)
dot1l dot1l coding upstream 157960 24520342 ~ 24548207 (+)
LOC113547059 egln1 coding downstream 35607 24743111 ~ 24765317 (+)
vps13c vps13c coding downstream 102325 24809829 ~ 24913123 (+)
rcn1 rcn1,LOC107690795,LOC107719795,LOC107728085,LOC107662342 coding downstream 208112 24915616 ~ 24930743 (+)
zdhhc13 LOC108270773 coding downstream 242910 24950414 ~ 24984205 (+)
immp1l immp1l,LOC107719794,LOC107594745 coding downstream 450901 25158405 ~ 25170812 (+)
G187286 fkbp8 non-coding upstream 59505 24642759 ~ 24646662 (+)
G187268 NA non-coding upstream 116464 24589326 ~ 24589703 (+)
G187265 LOC108270831 non-coding upstream 129934 24575015 ~ 24576233 (+)
G187258 NA non-coding upstream 153853 24525684 ~ 24552314 (+)
G187257 NA non-coding upstream 193999 24511672 ~ 24512168 (+)
G187309 NA non-coding downstream 29105 24736609 ~ 24737071 (+)
G187316 katnb1 non-coding downstream 66261 24773765 ~ 24774186 (+)
G187276 NA non-coding downstream 96267 24803771 ~ 24806565 (+)
G187340 NA non-coding downstream 224141 24931645 ~ 24932046 (+)
G187527 NA non-coding downstream 280375 24987879 ~ 24988093 (+)
oaz1a oaz1 other upstream 137524 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 495404 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 2325147 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 2747208 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 3441112 21252145 ~ 21265055 (+)
LOC113523924 nell1 other downstream 824241 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 1478358 26185862 ~ 26212115 (+)
G188164 NA other downstream 1499438 26206942 ~ 26210010 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 1553026 26260530 ~ 26352035 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G160400 NA non-coding CI01000030 null 4242233 ~ 4245333 (-)