G187563


Basic Information

Item Value
gene id G187563
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 25121247 ~ 25122115 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU222026
gctgcttacGTTTACATtaatggcatttggcagatgccgttatccagagtgacttacaattatctcatttatacaactgagcagttgagggtgttgctcaagggcccagcagtggcagcttggtggtgctaggatttgaactctcaaacttctgatcagaagtccaacgtcttaaccactgagctaccacttcccttcatgacatgacatgcttcatgacaatgcccattgttaaatgcactatacaaacaaaattgtattgaattgaatttaagaTTACGAGGAGGCTTCTAGTTTCTCATTCATGTTTTTGTCTCTTGCCAAAGTGTGGTTGTACATTAACTGACTTCTGTCACTATCTCCACCGCCTGACAGAATACTTCTCCTACACAGCCAATCCGGGCCTGTACCACCCGTCACTTACCCTGCTCCTCATCACTGACCAAGAATTGTTACTGTTGCCGTTGGCAGTAAAACTTTTTGTCGGGTTGTTCACCgagtttctgcctcttcttttccctgaaatctccGTCGTACCCTTTCCCAACATCGCGGGCATCTCGAGGCACAGCACCGAACTTTAgcaatgtctctctctcacacacacacgactagctagctagctaacaggctaagctgagactgagatgatggctaattcgcggcctcgctgtcaaaaacaagaagtgtgaatagcaactttaaaaaaatgcacaaatcccctcagacaagagcacaaacagttaaacatcaactACCAAGTCTGTATACTGCAACGctgcctttataaatagctagctctatGAAGTTAGCAATACCAAGCCAACTAAGTTCGCCGAACTATATTAAGCCTATCGgattagctagta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222026 True 869 lncRNA 0.44 1 25121247 25122115

Neighbor

gene id symbol gene type direction distance location
zdhhc13 LOC108270773 coding upstream 137042 24950414 ~ 24984205 (+)
rcn1 rcn1,LOC107690795,LOC107719795,LOC107728085,LOC107662342 coding upstream 190504 24915616 ~ 24930743 (+)
vps13c vps13c coding upstream 208124 24809829 ~ 24913123 (+)
LOC113547059 egln1 coding upstream 355930 24743111 ~ 24765317 (+)
ankrd24 LOC108270748,LOC107586440 coding upstream 416339 24684609 ~ 24704908 (+)
immp1l immp1l,LOC107719794,LOC107594745 coding downstream 36290 25158405 ~ 25170812 (+)
e2f8 e2f8 coding downstream 66178 25188293 ~ 25199986 (+)
nav2a nav2,LOC106561918 coding downstream 82004 25204119 ~ 25326654 (+)
htatip2 htatip2,LOC107557281,LOC107662344,LOC107579432 coding downstream 235868 25357983 ~ 25383000 (+)
prmt3 prmt3 coding downstream 265197 25387312 ~ 25448761 (+)
G187527 NA non-coding upstream 133154 24987879 ~ 24988093 (+)
G187340 NA non-coding upstream 189201 24931645 ~ 24932046 (+)
G187276 NA non-coding upstream 314682 24803771 ~ 24806565 (+)
G187316 katnb1 non-coding upstream 347061 24773765 ~ 24774186 (+)
G187309 NA non-coding upstream 384176 24736609 ~ 24737071 (+)
G187612 NA non-coding downstream 53693 25175808 ~ 25176089 (+)
G187668 NA non-coding downstream 150161 25272276 ~ 25272599 (+)
G187675 NA non-coding downstream 168398 25290513 ~ 25290974 (+)
G187782 NA non-coding downstream 223176 25345291 ~ 25345491 (+)
G187895 lrp4 non-coding downstream 624995 25747110 ~ 25750632 (+)
oaz1a oaz1 other upstream 552604 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 910484 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 2740227 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 3162288 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 3856192 21252145 ~ 21265055 (+)
LOC113523924 nell1 other downstream 409630 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 1063747 26185862 ~ 26212115 (+)
G188164 NA other downstream 1084827 26206942 ~ 26210010 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 1138415 26260530 ~ 26352035 (+)

Expression


Co-expression Network