G187675


Basic Information

Item Value
gene id G187675
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 25290513 ~ 25290974 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU222140
gtatggtgtgttatgattggttgagagcagtATGGTTTGTTATGATTGGTTGAGTGCAGTATGGTGTGttatgattggttgagagcagtATGGTTTGTTATGATTGGTTGAGTGCAGTACGgtgtgttatgattggttgagagcagtacggtgtgttatgattggttgagagcagtacggtttgttatgattggttgagtgcagtacggtgtgttatgattggttgagagcagtATGGTTTGTTATGATTGGTTGAGTGCAGTACGGTGTGttatgattggttgagagcagtaaggtgtgttatgattggttgagagcagtaaggtgtgttatgattggttgagagcagtaaggtgtgttatgattggttgagagcagtacggtgtgttatgattggttgagag

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222140 True 404 lncRNA 0.42 2 25290513 25290974

Neighbor

gene id symbol gene type direction distance location
e2f8 e2f8 coding upstream 90527 25188293 ~ 25199986 (+)
immp1l immp1l,LOC107719794,LOC107594745 coding upstream 119701 25158405 ~ 25170812 (+)
zdhhc13 LOC108270773 coding upstream 306308 24950414 ~ 24984205 (+)
rcn1 rcn1,LOC107690795,LOC107719795,LOC107728085,LOC107662342 coding upstream 359770 24915616 ~ 24930743 (+)
vps13c vps13c coding upstream 377390 24809829 ~ 24913123 (+)
htatip2 htatip2,LOC107557281,LOC107662344,LOC107579432 coding downstream 67009 25357983 ~ 25383000 (+)
prmt3 prmt3 coding downstream 96338 25387312 ~ 25448761 (+)
slc6a5 slc6a5 coding downstream 164734 25455708 ~ 25484810 (+)
trnar-acg_9 NA coding downstream 215449 25506423 ~ 25506495 (+)
tollip tollip coding downstream 633206 25924180 ~ 25930589 (+)
G187668 NA non-coding upstream 17914 25272276 ~ 25272599 (+)
G187612 NA non-coding upstream 114424 25175808 ~ 25176089 (+)
G187563 NA non-coding upstream 168398 25121247 ~ 25122115 (+)
G187527 NA non-coding upstream 302420 24987879 ~ 24988093 (+)
G187340 NA non-coding upstream 358467 24931645 ~ 24932046 (+)
G187782 NA non-coding downstream 54317 25345291 ~ 25345491 (+)
G187895 lrp4 non-coding downstream 456136 25747110 ~ 25750632 (+)
G187961 NA non-coding downstream 627577 25918551 ~ 25919605 (+)
G187970 NA non-coding downstream 650918 25941892 ~ 25949972 (+)
G188127 LOC108271167 non-coding downstream 697824 25988798 ~ 25993403 (+)
oaz1a oaz1 other upstream 721870 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 1079750 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 2909493 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 3331554 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 4025458 21252145 ~ 21265055 (+)
LOC113523924 nell1 other downstream 240771 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 894888 26185862 ~ 26212115 (+)
G188164 NA other downstream 915968 26206942 ~ 26210010 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 969556 26260530 ~ 26352035 (+)

Expression


Co-expression Network