G187895 (lrp4)


Basic Information

Item Value
gene id G187895
gene name lrp4
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 25747110 ~ 25750632 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU222386
CAAAGAAGTAATTCACTGTCACACAACACGGCTTGTTAGTATCGCAAAGCAGAAAATTCATATACAGACTTTTCATATTTACACCCAAGTGACAAGCAAAACAAAGGAATTATAAATATCTCTTAATTAACTTTACAACAGTTACATGTATACTGATCTTTCTGAGACATAAAAGAGCACTCTGTTAAATAACTGGCACATCATTGACATGGTGTGGAGAacgaaaaaacaaacaaaaaacaaagcgAGAAAGTGGTTCATGAAGTCCTCTCCAGTGAGTCAAAATAAAGGGACTGTTCAGCATTTtggcaatgaaatgttttttttttgtttgtttttttttaaacctgcttTCACAAAGCCAGGAGGAGTAATTCGCCGTTTTGTTTCTTCTCCGAGTGCAGAAGCTGCTGTTCAGTCTGTGTTTAGAGACAGCTAACGATATTTAAAATTCTTAGAAACaaagcttttctatagctcatgcataaaatcatggcATAAccataatttcatttttaaacaaaaaacatacccAGGTTTTTGGTTCAAAATAACTGCATTTGtagttcatttttataaacCCCAATAAAGTACGGTaataaatccattataacaTCATAACATATAACATCAAATTTTACAAAATCACTTATTTAAAATCGAGATTATGATTTGAAGCACATACATGAAGAAGAGCTGAGCGTTTTGTGTGAGTTTGATGAAATATTGTACACTTCTGATTGTTTTGCTGCACTGTCCCAATAAAGGAATTAACTATAGCAtattgttagtgttttttttttttttattagagtttataaaaatgGATTAACGAAGACAGGTTTTAATAGGGAGTGCTGCTAAAATGTctatttctaaaatatataatattgttacTGATGCTGCTAAACCTGcacacagagaagaaaaaaaaacagaaaacgaAGCTGAATCCATCTGACTTTGTgttaataaattagaaaaacTTTCACAATCCctttaacacaataaaaaaatccctttgtacaaaaaaaaaggaactatacaataacaataaaacatctTTTAACACATAGAAATGCGTCTCTGCACTTTCAACTCTGTAcaactgggtttttttttgtcagtcaGTTTGAAATATTTAGGTAAAACAGGAAGCAGGTTACGTGGAGATGTTAAAAACAAGCCGAGAGCGGAGGATGAAGTAGCTGCCGAGCCCTTCCGTCAGGATTATTGGCCtcgctaagtgtgtgtgtgtgtgtgtcagtggggcATGTGCCGATATTAAATCTTCACTCTAGTTttcattacttcctgttttgatTGTGTTCCTAACAAAGACCTTCGGCTGTGTCTCATTTGGGATTCCACGCTTTCTAGCAATCGCTTACtagagtctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagtttgaaCCGTCTACGCTGAAATACCGAGGATATCGTTTGAATATGACGGTATACCGTAACACcgattatcagcacatgcccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggtagcAGCAAATCAGCATTGTGCTGAAACATGAGAAATGAACTTCAATGCATCACTGATCTATagcgtagtgtgtgtgtgtctgaaatcagaaatataaatatgaagcgaagaaatcatcatcatcatcatcatcatcatcatcatcatcatcatcatccagcttttttttcttttaaccttCCAAGTAATACAATCTTCTGTACTAGGGGTGAGCGATacggttaaaaaaaatcatatcgcAATACTTAAAAACGCTTTCGTGATTGATGCGCGTCATAATGCTTTCGTTTTGATGAAATATTTAATGGATTAAGGAACAAAAATAAGCTTTAtaactaaaattattattattattattattttaaattattatttttttaaactaaggAAATCATTACGgagttatttctttttttctgtgctgttaTCATGATATTAGGCGTGCACGCTCTACATCACGGATGATACAAGAggaaatgggcaaaaatattgGTACCCCTGCCTGGATTTTATTCCAGTAAAACACAATTTGCCcccaaaaaaatgttcaaatgtttaaaaaaaattatttatacctttgcactgtttgcacaggaacaaaaaacaaaacttttttgaaaatatctgcattttttaaaaacctattTTACTAAAGCATTCTAAAAATAGCTTGGACAAAATTATTGGTACCCTTTGAAAAGTcgtaagaaaaaataaaagcaggcTGGAGATCAGTTTCGTTATCTGCagatcaggagaaaaaaaaatcatttgcgATGTCGagaaaacagcacagaaaaatataaacgACTCGCGCTGTTTTGGACGAATGGCTACATCTGGGCTACgaggaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatttctgacTGAGCTGTTCCTTTTTAACTGTCCATCAAGTACATATGTTATACTGTctacatttacaaaaaagaaGTGAGTAAAACATTACAATTCAGAGACAGACGATGAGAAAAAGAAGCAACGTCTCCATCATCAGCCCGTTCGTGCTGCATCCCGCAGGAGGTTCAGAAAGCACCGCGACAGCGCTCTGTCCTTGTGCGCGGCCATTAATCCATGTCCTGTGAGGCCTTTAGCAGTATTTAGATAAATAAAGTACATGAAGGTAAGATGAGTGATGAGGGGtggctgttaaaaaaaaaacgtctgcTGTTTACCATctgcgaaaaaaaaaagcctcgtTTCATACACAATAAtctgtctttgtttttaaaaaaaaaaaaaaaaaaaaacagttcccaGTATACTGATATATCaatattttcttaaattgtCCTTTTGATCCAGCTCTGTTCATATTCctctgaaaacaaaacaaaaaaacctcaatGGTGTAAGAGTCAGCGTTGTCCGTCCACTGAAGATACTGGATGGTGGGCCAGTgctgtgtacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtttaggcTCCAGTAGATGAGTgttttgagtgtgtgagtgtgtgtgtaggtgtgagtgAGCTTCACACTTCGCTCTCAGTGGAGGGTTTGCGATTTGGGACCCAGCCCGTGTCGGGGAGCGTGCTGTGGCGTTTGGGCGTGACGACGGGAGCGGTGTTCAGACTCgagcattctgattggtcgccTTGAAGCAGCTGTTCGGTCTCGGTGTCGTCCAAGGAGGCGGAGCTTGCCTGAAGGGAGGCGGAGCTGGCCTGTAAGGACACCGTGTCGGTGCGCATGCAGGTTTTAAAGGTAGCTCCTCGACACACTTTCAGCTGCTTCAGATCCTCCCAGTAAAGCTCCTCCCCTGAGAGGAGACACACCCCCTCTACTATACGGATCTTCTCGTTGGTGTAAC

Function

symbol description
lrp4 Predicted to enable calcium ion binding activity. Acts upstream of or within axon regeneration; establishment of synaptic specificity at neuromuscular junction; and neuromuscular synaptic transmission. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including actinotrichium; adaxial cell; caudal vein plexus; median fin fold; and nervous system. Used to study bone development disease. Human ortholog(s) of this gene implicated in Cenani-Lenz syndactyly syndrome; congenital myasthenic syndrome 17; and sclerosteosis 2. Orthologous to human LRP4 (LDL receptor related protein 4).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222386 True 3452 lncRNA 0.38 3 25747110 25750632

Neighbor

gene id symbol gene type direction distance location
trnar-acg_9 NA coding upstream 240615 25506423 ~ 25506495 (+)
slc6a5 slc6a5 coding upstream 262300 25455708 ~ 25484810 (+)
prmt3 prmt3 coding upstream 298349 25387312 ~ 25448761 (+)
htatip2 htatip2,LOC107557281,LOC107662344,LOC107579432 coding upstream 364110 25357983 ~ 25383000 (+)
nav2a nav2,LOC106561918 coding upstream 420456 25204119 ~ 25326654 (+)
tollip tollip coding downstream 173548 25924180 ~ 25930589 (+)
LOC113523928 ap2a2,LOC106562310,LOC106587467 coding downstream 288754 26039386 ~ 26062656 (+)
slc38a7 slc38a7,LOC107596458,LOC107683258 coding downstream 333025 26083657 ~ 26095138 (+)
helz2a helz2 coding downstream 348892 26099524 ~ 26138619 (+)
LOC113524556 sdhaf2,LOC107685224 coding downstream 473185 26223817 ~ 26227916 (+)
G187782 NA non-coding upstream 401619 25345291 ~ 25345491 (+)
G187675 NA non-coding upstream 456136 25290513 ~ 25290974 (+)
G187668 NA non-coding upstream 474511 25272276 ~ 25272599 (+)
G187612 NA non-coding upstream 571021 25175808 ~ 25176089 (+)
G187563 NA non-coding upstream 624995 25121247 ~ 25122115 (+)
G187961 NA non-coding downstream 167919 25918551 ~ 25919605 (+)
G187970 NA non-coding downstream 191260 25941892 ~ 25949972 (+)
G188127 LOC108271167 non-coding downstream 238166 25988798 ~ 25993403 (+)
G188168 NA non-coding downstream 358991 26109623 ~ 26109848 (+)
G188179 LOC108270676,LOC108439640 non-coding downstream 402897 26153529 ~ 26166792 (+)
LOC113523924 nell1 other upstream 50238 25531745 ~ 25696872 (+)
oaz1a oaz1 other upstream 1178467 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 1536347 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 3366090 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 3788151 21958888 ~ 21958959 (+)
polr2l polr2l other downstream 435230 26185862 ~ 26212115 (+)
G188164 NA other downstream 456310 26206942 ~ 26210010 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 509898 26260530 ~ 26352035 (+)

Expression


Co-expression Network