G187961


Basic Information

Item Value
gene id G187961
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 25918551 ~ 25919605 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU222471
cacGCAACCTGCTACCCCccaacaaaaaaattgttcacaaagctccgccccttcaAGTCCTGTTTATTCCAGGTTGTTCAATGGGatggggggtgaatacttatgcaaggcattgTAAGAAATAGTGTTTGTTTCTGGTTGAAGCAAAACAGCCTTGGTCGTCCTAGAGTCCAGGagtgggatttttaaaaaataaaaaaaaaagaaagaaagaaaatgtgattgaGGTCATCCAAAGGTGCACTCGTTTAATTATGGAATCACATCCATTAGTGTCTTCATGtaaaaaagaactgaaacacAGCATCTAAGTTACAAATAATTTGGAAATAAAAACGTCATTTATGtacacacatatttaaacaCAGCGTATCCCTACGTACTAAGCAGGTGATAAAGATAAAGCTTAAATAAGGAacgaaatattaaaatacagcatAAACTCCACACACATTAATCAAGTCCACATGAAATGTGTACTGATGCACGAGCACAGTTTGCACGGATATCTTCTGGACAGTTCGATTAGTTAGGTGCCGATTAGTCTTGTTCTTGTAATTCACAGATGATGTACTCTTTTTCAGATttcaattattataaaaaaacaatatttgatacttctacaaccaacactgtTGTGACATTGTGAATGTAAGGCAGTAGTGCTGATATTCTAGAAATTTCTAAATTTCAGAAAACTTTGGGGCTGTTTCTGTTGCGAGCTTTTACATAAGATTTTATAAAAAGAGATGGCAAAAATGACATCTATTGCAAATCCAAAAAAAACTGCCACCTCCTGGTATGAAGAGGTATTTCCTGTCATAAGATATATATCTTATCTTACAAGACATACATGTATGTGTTCGTTTGCAACTTTTCACAGAAAATGTTGCACACAAGTGCAGTGAAACGAGGCAAAGTGAAATGGCCTTCATTTTAGGCGCTGACCTGGTTTGCCGAGGTGAAAGAGTCATGTTATTGGATGTAAAGTGTATGTTGCATAATTATATCCACCAGCATTATTGGTTATTCTTAAAACTgatatctattaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222471 True 1055 lncRNA 0.35 1 25918551 25919605

Neighbor

gene id symbol gene type direction distance location
trnar-acg_9 NA coding upstream 412056 25506423 ~ 25506495 (+)
slc6a5 slc6a5 coding upstream 433741 25455708 ~ 25484810 (+)
prmt3 prmt3 coding upstream 469790 25387312 ~ 25448761 (+)
htatip2 htatip2,LOC107557281,LOC107662344,LOC107579432 coding upstream 535551 25357983 ~ 25383000 (+)
nav2a nav2,LOC106561918 coding upstream 591897 25204119 ~ 25326654 (+)
tollip tollip coding downstream 4575 25924180 ~ 25930589 (+)
LOC113523928 ap2a2,LOC106562310,LOC106587467 coding downstream 119781 26039386 ~ 26062656 (+)
slc38a7 slc38a7,LOC107596458,LOC107683258 coding downstream 164052 26083657 ~ 26095138 (+)
helz2a helz2 coding downstream 179919 26099524 ~ 26138619 (+)
LOC113524556 sdhaf2,LOC107685224 coding downstream 304212 26223817 ~ 26227916 (+)
G187895 lrp4 non-coding upstream 167919 25747110 ~ 25750632 (+)
G187782 NA non-coding upstream 573060 25345291 ~ 25345491 (+)
G187675 NA non-coding upstream 627577 25290513 ~ 25290974 (+)
G187668 NA non-coding upstream 645952 25272276 ~ 25272599 (+)
G187612 NA non-coding upstream 742462 25175808 ~ 25176089 (+)
G187970 NA non-coding downstream 22287 25941892 ~ 25949972 (+)
G188127 LOC108271167 non-coding downstream 69193 25988798 ~ 25993403 (+)
G188168 NA non-coding downstream 190018 26109623 ~ 26109848 (+)
G188179 LOC108270676,LOC108439640 non-coding downstream 233924 26153529 ~ 26166792 (+)
G188184 NA non-coding downstream 241709 26161314 ~ 26164756 (+)
LOC113523924 nell1 other upstream 221679 25531745 ~ 25696872 (+)
oaz1a oaz1 other upstream 1349908 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 1707788 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 3537531 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 3959592 21958888 ~ 21958959 (+)
polr2l polr2l other downstream 266257 26185862 ~ 26212115 (+)
G188164 NA other downstream 287337 26206942 ~ 26210010 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 340925 26260530 ~ 26352035 (+)

Expression


Co-expression Network