G188127 (LOC108271167)


Basic Information

Item Value
gene id G188127
gene name LOC108271167
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 25988798 ~ 25993403 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU222672
GGGCCAAAGTCCATCCAGTCAGACCAAGAGCACTCATACCCGCAATGAGGTGTGGGCTGAATTGTAGATTGTGTCACAGTTGGGGATGTTGTAAGTGGGgttgtggttgttgtacttGGTGTTGTTGCAGATGTTGTACTTGGTGCTGTTGTacttgttggtgttgttggtgttgatgttgttgttggttttgttgtagttgtttccggtcttgttgttgttggtgttgtagttgttggtgttgtagttgttgtagtggttgttgttgtagttgatgatggtgttgtagttggtggtgttgtagttgttgttgctgGTGGtGTAgctgttggtgttgttgtggtACACCATTCTGGTAATTGACAACAATACACTCTAATTTCATAGTCAAAGCACTGCTGTTGAAGACCTTGATTTTCATTGAGACAGATGAGTCCATCTTGGGCATTACAGGTCACTTCCTGGCCCAATTGTGAGAGGGTAAGGTCAGGGTAGAGTTTTGCTCGGCATTCAACTTTTGGTGGGGTGGAACAGATCTTAGGATATGTGTCACTTATCCTTCTTATTGGTACAACTTCACCACCATTAGCACCAGTTGTAGGAGGGCCAAAGTCCATCCAGTCAGACCAAGAGCACTCATACCCGCAATGAGGTGTGGGCTGAATTGTAGATTGTGTCACAGTTGGGGATGTTGTAAGTGGGgttgtggttgttgtacttGGTGTTGTTGCAGATGTTGTACTTGGTGCTGTTGTacttgttggtgttgttggtgttgatgttgttgttggttttgttgtagttgtttccggtcttgttgttgttggtgttgtagttgttgtagtggttgttgttgtagttgatggtggtgttgtagttgttgtggtgttgttgttgttgttgtagttgttgtagctgttggtgttgttgtggtACACCATTCTGGTAATTGACAACAATACACTCTAATTTCATAGTCAAAGCACTGCTGTTGAAGACCTTGATTTTCGTTGAGACAGATGAGTCCATCTTGGGCATTACAGGTCACTTCCTGGCCCAATTGTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222672 True 1067 lncRNA 0.44 2 25988798 25993403

Neighbor

gene id symbol gene type direction distance location
tollip tollip coding upstream 58209 25924180 ~ 25930589 (+)
trnar-acg_9 NA coding upstream 482303 25506423 ~ 25506495 (+)
slc6a5 slc6a5 coding upstream 503988 25455708 ~ 25484810 (+)
prmt3 prmt3 coding upstream 540037 25387312 ~ 25448761 (+)
htatip2 htatip2,LOC107557281,LOC107662344,LOC107579432 coding upstream 605798 25357983 ~ 25383000 (+)
LOC113523928 ap2a2,LOC106562310,LOC106587467 coding downstream 45983 26039386 ~ 26062656 (+)
slc38a7 slc38a7,LOC107596458,LOC107683258 coding downstream 90254 26083657 ~ 26095138 (+)
helz2a helz2 coding downstream 106121 26099524 ~ 26138619 (+)
LOC113524556 sdhaf2,LOC107685224 coding downstream 230414 26223817 ~ 26227916 (+)
LOC117598406 sdhaf2,LOC107685224 coding downstream 247669 26241072 ~ 26244720 (+)
G187970 NA non-coding upstream 38826 25941892 ~ 25949972 (+)
G187961 NA non-coding upstream 69193 25918551 ~ 25919605 (+)
G187895 lrp4 non-coding upstream 238166 25747110 ~ 25750632 (+)
G187782 NA non-coding upstream 643307 25345291 ~ 25345491 (+)
G187675 NA non-coding upstream 697824 25290513 ~ 25290974 (+)
G188168 NA non-coding downstream 116220 26109623 ~ 26109848 (+)
G188179 LOC108270676,LOC108439640 non-coding downstream 160126 26153529 ~ 26166792 (+)
G188184 NA non-coding downstream 167911 26161314 ~ 26164756 (+)
G188202 NA non-coding downstream 225528 26218931 ~ 26222921 (+)
LOC117598393 NA non-coding downstream 426203 26419606 ~ 26420373 (+)
LOC113523924 nell1 other upstream 291926 25531745 ~ 25696872 (+)
oaz1a oaz1 other upstream 1420155 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 1778035 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 3607778 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 4029839 21958888 ~ 21958959 (+)
polr2l polr2l other downstream 192459 26185862 ~ 26212115 (+)
G188164 NA other downstream 213539 26206942 ~ 26210010 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 267127 26260530 ~ 26352035 (+)

Expression


Co-expression Network