G188164


Basic Information

Item Value
gene id G188164
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26206942 ~ 26210010 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU222716
ACTTCCCTGCATTCTCAGGTTCTCCTTGAGGACGATTTTGTGGCCTTTCTCAGTGTCACTTAAAGTCCAGCTTTCTGAGACTTCTATCTACTCCGTCAGCACAAGATTAGCACAAGGTCAAAGAGGAATAAAGGAAGGACGGAAGAAGGACATCCAAAAGTACCcgaaagacaaaaaacaccCCCCACGCATTGACCATCCATATGGAGTCGAAGGCTAAGAGCAGCGTGAAACCAGGTACcaagacagagaagaaagaaTCGGCACCTCCTCCAAAATCGAACCCTGCTCCTGCCGAACCTGCACCGCCTACCGAAGAGGAAAAACCTGTGCAAGATGGCAACCAAGAGGGAGCGCAGGAAGGGAACGAAGCAGCTGGGGGCAGCTGTGAAACCCTGGAGAACCTGAAGCCGTTCCTCATTGGTGGAGCTATTGTAGCACTTGGAGCTGTATTGGTGGGCTTGGTCTTATTAGCCAGAAAGAAGTGACAGCGTGATATGATTGGCCAACAGGTTCATGGGTGATTGGGTCACAGCCTAACAGGGGGGTGGTGTTTAAAATATCGTCGGGGTGGGGAGCCACCGTGCTTACTTTTCATTAAGCTTTGATTTCAGCACTAGAGTAGTCATCACAGTAGTAGAAATAGATGAAGCTCACTTAGGCCTTGTTGAATGTGAATGCGACCTTCACATAAATCCAGTAATGTGTAGTTGTATCCTCACAGACCAATGATATAACGACGCAGACGCACGCTTGGGCGGAATTCAATGAAATAAATGCCAACTTGAGACGTAGCATACTTTCTGTAAAATGAATTACAATTTATATTCTCCAGTGAACTTTCACCTAATAATAATGCTAGCTAGGTAACCAGtgcgttttttttcccattaacatgagaaaaaaaaacacccaactGCTGCTAGTCGCCCTGGAAATCAGAGTCAGAGCTGTTGCATCAGATTTTGCAGCAGATCTGAAACCTTCTTCCAGGAGTCTCTTGCAGGAGAATATTTCCAGCAGGGAGGGCGTGCGGAAATGGGCCTGAATCCCCCAAACTACCATACTATTACTTTAACCATCATTTTAACAGACAGCGTTCTCAAAACAAGGTTAGATAAAATGGGAATAGTCTGTGAGGCCGCAAATACACCGAACCCGGATTACaccacatgcagacacacagtcagtagatcctacaacaacaacaacaacaacaacaacaaaatggaCAGCAGCAGAGTGTATTTACTCGAGTTCTCTTGATCAGGTTACTCATCCTTCTGATCTCTTACAGCCTCCAAACAATATGTACCTGAGGAAAATGTTAATTATCCTTGAAATAAAGTGCAATGTAAGCGTATTTTCTTATATGATTGACCGTGATTAAACTTGTAATACAACCCaggattatatttatacatttatggatTACAGTGTAAGAGCAAGAGTCAGTTTGATTTGATGTAAAGCAAGTCAAGCGGTTCAGTACCGATAAAGAGCAGATGAGggctaaaatgtgtgtgtgtgtgtgtgtgtgtgtgacagagactATAGATATAAGATAGATGCATTGATGGATTACTGCAACCTGAATAGTTATGTGTCTAAATGTATGTCTCTATAgtcatataattattattattatgattattattattattattttcatgtatcCATGTTTGTCTCACATTTCTGTAACTCATGTATGAGCATTTTAGCAACTACTggatttaatcattatttaattatttttcatggaTGCATCCAGTCCTTTTGCTTGACGAATGAAACTCATCCATTTCCTGGTGAccataaagtgttaaaaagaaaagaaaaagaaaacacactaaTGGAAACACATTAGAGCGTTTAATGGTGACGGAGATGCGGATCAATGTCAGTAAGACAGCTGGACTGAAATGGTCATCATGCAAACTGCCTTTGTCTGGACATGTAACCAGTTATTAAAGACAAAGACGATTTTTCCGTTCCCTCAAGTGCGTATGTAATGCAATAATACAAATAGCACTCTGTAGATCAACTGATAGACCTGTAAAGTATGACGAGATGATACTGATTATTGTTTAGAATGTGGAATCAACATGCTGAGACGTTGGAGAGATGGGACGCTGGACGGTATTAAAGAATTCTATAAAAGAGGAAATAGAAAATATAGCCGTGTTGAGAAATGTTATGTTCTGACAGACATATTTTTCTGGTTGTTTTGCGCTCTCCTGCTCCTCGAACCCCCTCCCTCTGCTCCTTATGTACAATAAAATCAAGATGGCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222716 True 2294 TUCP 0.41 2 26206942 26210010

Neighbor

gene id symbol gene type direction distance location
helz2a helz2 coding upstream 68323 26099524 ~ 26138619 (+)
slc38a7 slc38a7,LOC107596458,LOC107683258 coding upstream 111804 26083657 ~ 26095138 (+)
LOC113523928 ap2a2,LOC106562310,LOC106587467 coding upstream 144286 26039386 ~ 26062656 (+)
tollip tollip coding upstream 276353 25924180 ~ 25930589 (+)
trnar-acg_9 NA coding upstream 700447 25506423 ~ 25506495 (+)
LOC113524556 sdhaf2,LOC107685224 coding downstream 13807 26223817 ~ 26227916 (+)
LOC117598406 sdhaf2,LOC107685224 coding downstream 31062 26241072 ~ 26244720 (+)
LOC113524564 LOC108261406,LOC108270747,LOC108273692,LOC108273544,LOC108270753,LOC108273546,LOC108261257 coding downstream 211903 26421913 ~ 26429101 (+)
LOC117598404 LOC107716903 coding downstream 281107 26491117 ~ 26491773 (+)
rplp2l rplp2,LOC108260028,LOC103139322,LOC107381616,LOC105916325,LOC101168608,LOC108250873 coding downstream 304540 26514550 ~ 26517299 (+)
G188179 LOC108270676,LOC108439640 non-coding upstream 40150 26153529 ~ 26166792 (+)
G188184 NA non-coding upstream 42186 26161314 ~ 26164756 (+)
G188168 NA non-coding upstream 97094 26109623 ~ 26109848 (+)
G188127 LOC108271167 non-coding upstream 213539 25988798 ~ 25993403 (+)
G187970 NA non-coding upstream 256970 25941892 ~ 25949972 (+)
G188202 NA non-coding downstream 8921 26218931 ~ 26222921 (+)
LOC117598393 NA non-coding downstream 209596 26419606 ~ 26420373 (+)
LOC117598395 NA non-coding downstream 210364 26420374 ~ 26421499 (+)
G188395 NA non-coding downstream 217358 26427368 ~ 26575866 (+)
LOC117598394 NA non-coding downstream 219125 26429135 ~ 26436719 (+)
LOC113523924 nell1 other upstream 510070 25531745 ~ 25696872 (+)
oaz1a oaz1 other upstream 1638299 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 1996179 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 3825922 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 4247983 21958888 ~ 21958959 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 50520 26260530 ~ 26352035 (+)

Expression


Co-expression Network