G188179 (LOC108270676,LOC108439640)


Basic Information

Item Value
gene id G188179
gene name LOC108270676,LOC108439640
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26153529 ~ 26166792 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU222731
tgtgtgtgtggtgtgaatcGTTTTCGATGTGTGGAATCGACTCCAGTGCTTTGAGGTTGACTCTTGCCCTGCGTTCACACTACTGTGATTGACAAGTCGACTTTATATTTGGCAGGAAAACggtaacacacactttgtctCCATCAACGCCACGTTAACCGTTTTGCTAAAATTCTCCAGACACAGAAAGGGGACGAGGAGAACACTTGCCTCTCCATGAGCTTCTCTTTGTCCCAGTTGAAGTGACTGAGCAGTATTCTGGTTATAGTAGCTGGGTTCTGTATAACCTCGTTCACCTCTCTGATACACTCCACCATGTGCTGGAGGATCTGCTCGGCGGTTAACACTTCATATCGGTAATCCTCTTCGTCCCGTCCGGCCCCGAggcctccacctccacctccgcCGCCTCCTCCGCCGCTGCTGCCGGTCTCCTCGCAGCCGTCCCGCTCTCCTCCGGCCACCTCCGGCTCCACCAGCTCCACTTCGCCGAGGTCCAGCGCGTCGTCGTCGGCTTCCTCCTCAGCGCTGTCCTCGctacactcctcctcctcctcctcctcgtcgtCGTCGAACTCATAGTTATAACCCTCGTCCGAGTCCATTACTTGacgtgttttgtttttgtttgtttgcttttttacaaagcgaatttaaaacaaacaaacacacaatcaaaaCAATCTCCACTGATGCTAGCTCCAGCTGCTACAGGCTACAAGCTGCAGCCGCATTAGCAGAGCAAGCTAACGGTAAAAACCTCCTTACTTCTGCTAGGCGTTATTTATGGTCAAATCCCAAACGGCTCCTTTCTCCCCTACATAAGCGCACTACATAGTCCCTAGCTCAATACCAAAGCACGTCACTGAATGTCCACTAGGAAGTGATTCAGGACGCGGCGCTTCTCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222731 True 909 lncRNA 0.52 2 26153529 26166792

Neighbor

gene id symbol gene type direction distance location
helz2a helz2 coding upstream 14910 26099524 ~ 26138619 (+)
slc38a7 slc38a7,LOC107596458,LOC107683258 coding upstream 58391 26083657 ~ 26095138 (+)
LOC113523928 ap2a2,LOC106562310,LOC106587467 coding upstream 90873 26039386 ~ 26062656 (+)
tollip tollip coding upstream 222940 25924180 ~ 25930589 (+)
trnar-acg_9 NA coding upstream 647034 25506423 ~ 25506495 (+)
LOC113524556 sdhaf2,LOC107685224 coding downstream 57025 26223817 ~ 26227916 (+)
LOC117598406 sdhaf2,LOC107685224 coding downstream 74280 26241072 ~ 26244720 (+)
LOC113524564 LOC108261406,LOC108270747,LOC108273692,LOC108273544,LOC108270753,LOC108273546,LOC108261257 coding downstream 255121 26421913 ~ 26429101 (+)
LOC117598404 LOC107716903 coding downstream 324325 26491117 ~ 26491773 (+)
rplp2l rplp2,LOC108260028,LOC103139322,LOC107381616,LOC105916325,LOC101168608,LOC108250873 coding downstream 347758 26514550 ~ 26517299 (+)
G188168 NA non-coding upstream 43681 26109623 ~ 26109848 (+)
G188127 LOC108271167 non-coding upstream 160126 25988798 ~ 25993403 (+)
G187970 NA non-coding upstream 203557 25941892 ~ 25949972 (+)
G187961 NA non-coding upstream 233924 25918551 ~ 25919605 (+)
G187895 lrp4 non-coding upstream 402897 25747110 ~ 25750632 (+)
G188202 NA non-coding downstream 52139 26218931 ~ 26222921 (+)
LOC117598393 NA non-coding downstream 252814 26419606 ~ 26420373 (+)
LOC117598395 NA non-coding downstream 253582 26420374 ~ 26421499 (+)
G188395 NA non-coding downstream 260576 26427368 ~ 26575866 (+)
LOC117598394 NA non-coding downstream 262343 26429135 ~ 26436719 (+)
LOC113523924 nell1 other upstream 456657 25531745 ~ 25696872 (+)
oaz1a oaz1 other upstream 1584886 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 1942766 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 3772509 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 4194570 21958888 ~ 21958959 (+)
polr2l polr2l other downstream 19070 26185862 ~ 26212115 (+)
G188164 NA other downstream 40150 26206942 ~ 26210010 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 93738 26260530 ~ 26352035 (+)

Expression


Co-expression Network